- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 5 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
C2E.3: 10 residues within 4Å:- Chain A: V.358, R.359, D.362, T.379, D.383, R.386, I.387, R.390
- Chain B: R.313
- Ligands: C2E.4
14 PLIP interactions:12 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:R.359, A:R.359, A:T.379, A:T.379, A:R.390, A:R.390, B:R.313, B:R.313
- Water bridges: A:R.359, A:R.359
- Salt bridges: A:R.359, A:D.362
- pi-Cation interactions: A:R.359, A:R.359
C2E.4: 12 residues within 4Å:- Chain A: S.356, N.357, V.358, R.359, A.360, R.390
- Chain B: S.309, K.312, R.313, L.316, G.317
- Ligands: C2E.3
12 PLIP interactions:7 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:S.309, B:K.312, B:R.313, B:R.313, B:R.313, B:L.316, A:R.359, A:A.360, A:R.390
- Salt bridges: B:R.313
- Water bridges: A:R.390
- pi-Cation interactions: A:R.390
C2E.9: 10 residues within 4Å:- Chain A: R.313
- Chain B: V.358, R.359, D.362, T.379, D.383, R.386, I.387, R.390
- Ligands: C2E.10
11 PLIP interactions:9 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.359, B:R.359, B:T.379, B:R.390, B:R.390, A:R.313, A:R.313
- Salt bridges: B:R.359, B:D.362
- pi-Cation interactions: B:R.359, B:R.359
C2E.10: 12 residues within 4Å:- Chain A: S.309, K.312, R.313, L.316, G.317
- Chain B: S.356, N.357, V.358, R.359, A.360, R.390
- Ligands: C2E.9
12 PLIP interactions:5 interactions with chain B, 7 interactions with chain A- Hydrogen bonds: B:R.359, B:A.360, B:R.390, B:R.390, A:S.309, A:K.312, A:R.313, A:R.313, A:R.313
- pi-Cation interactions: B:R.390
- Water bridges: A:G.317
- Salt bridges: A:R.313
C2E.11: 17 residues within 4Å:- Chain A: P.72, R.137, G.144, A.145, A.146, A.147, Y.277
- Chain B: F.331, N.335, H.340, G.343, D.344, R.366, G.369, E.370, E.371
- Ligands: MG.12
11 PLIP interactions:6 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:N.335, B:N.335, B:R.366, B:G.369, A:A.146
- Salt bridges: B:K.332, B:D.344, A:E.133
- Water bridges: A:R.75, A:R.75
- pi-Cation interactions: A:R.137
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.5: 4 residues within 4Å:- Chain A: R.117, R.121
- Chain B: R.117, R.121
4 PLIP interactions:2 interactions with chain B, 2 interactions with chain A- Salt bridges: B:R.117, B:R.121, A:R.117, A:R.121
SO4.6: 7 residues within 4Å:- Chain A: D.327, I.328, D.329, F.330, E.370, K.442, R.446
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:F.330, A:E.370
- Water bridges: A:F.331
- Salt bridges: A:K.442, A:R.446
SO4.13: 8 residues within 4Å:- Chain B: D.327, I.328, D.329, F.330, F.331, E.370, K.442, R.446
7 PLIP interactions:7 interactions with chain B- Hydrogen bonds: B:D.327, B:F.330, B:F.331
- Water bridges: B:F.330, B:K.332
- Salt bridges: B:K.442, B:R.446
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wassmann, P. et al., Crystal Structure of Activated Pled, Identification of Dimerization and Catalysis Relevant Regulatory Mechanisms. To be Published
- Release Date
- 2010-04-21
- Peptides
- DIGUANYLATE CYCLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x BEF: BERYLLIUM TRIFLUORIDE ION(Covalent)
- 3 x MG: MAGNESIUM ION(Non-covalent)
- 5 x C2E: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one)(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wassmann, P. et al., Crystal Structure of Activated Pled, Identification of Dimerization and Catalysis Relevant Regulatory Mechanisms. To be Published
- Release Date
- 2010-04-21
- Peptides
- DIGUANYLATE CYCLASE: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B