SMTL ID : 2wb5.1 (1 other biounit)

GlcNAcstatins are nanomolar inhibitors of human O-GlcNAcase inducing cellular hyper-O-GlcNAcylation

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 5 residues within 4Å: Chain A: E.527, A.567, L.568, S.570, A.572 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: F.235, D.236 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: R.359, N.360 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.360, A:N.360

1 x VGB: (5R,6R,7R,8S)-6,7-dihydroxy-5-(hydroxymethyl)-2-(2-phenylethyl)-8-(propanoylamino)-5,6,7,8-tetrahydro-1H-imidazo[1,2-a]pyridin-4-ium(Non-covalent)

VGB.4: 16 residues within 4Å: Chain A: G.157, F.158, Y.159, K.188, D.267, D.268, Y.305, T.336, V.340, W.364, N.366, V.369, D.371, Y.372, N.399, W.460 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:D.267, A:Y.305, A:Y.305, A:T.336, A:V.340, A:W.364, A:W.364, A:W.460 Hydrogen bonds: A:G.157, A:K.188, A:K.188, A:D.267, A:D.267, A:D.268, A:N.366, A:N.399 Water bridges: A:D.268

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dorfmueller, H.C. et al., Glcnacstatins are Nanomolar Inhibitors of Human O-Glcnacase Inducing Cellular Hyper-O-Glcnacylation. Biochem.J. (2009)

Release Date

2009-03-31

Peptides

O-GLCNACASE NAGJ: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

O-GLCNACASE NAGJ

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