SMTL ID : 2wbm.2 (1 other biounit)

Crystal structure of mthSBDS, the homologue of the Shwachman-Bodian- Diamond syndrome protein in the euriarchaeon Methanothermobacter thermautotrophicus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: A.188, V.223, R.249, L.250, I.251, K.252 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.252 Water bridges: A:L.250, A:L.250 GOL.2: 6 residues within 4Å: Chain A: K.184, G.207, K.208, E.225, I.226, P.227 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.184, A:E.225, A:E.225

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: L.122, K.123, N.126, R.130 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.122, A:N.126 Water bridges: A:R.130, A:R.130 Salt bridges: A:R.130 SO4.4: 2 residues within 4Å: Chain A: R.31, R.38 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.38, A:R.38, A:R.38 Salt bridges: A:R.31, A:R.38 SO4.6: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:E.165

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: R.175, P.179, I.180, K.181 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ng, C.L. et al., Conformational Flexibility and Molecular Interactions of an Archaeal Homologue of the Shwachman-Bodian-Diamond Syndrome Protein. Bmc Struct.Biol. (2009)

Release Date

2009-06-02

Peptides

RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

RIBOSOME MATURATION PROTEIN SDO1 HOMOLOG

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