SMTL ID : 2wbp.1

Crystal structure of VioC in complex with Fe(II), (2S,3S)- hydroxyarginine, and succinate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.16 Å

Oligo State

monomer

Ligands

1 x ARG: ARGININE(Non-covalent)

ARG.1: 4 residues within 4Å: Chain A: R.47, Y.48, E.55, D.59 7 PLIP interactions: 6 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:Y.48, A:E.55 Hydrogen bonds: A:R.47, A:R.47, A:E.55, R.1 Salt bridges: A:D.59

1 x FE2: FE (II) ION(Non-covalent)

FE2.2: 5 residues within 4Å: Chain A: H.168, E.170, H.316 Ligands: ZZU.3, SIN.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.168, A:E.170, A:H.316

1 x ZZU: (2S,3S)-3-HYDROXYARGININE(Non-covalent)

ZZU.3: 15 residues within 4Å: Chain A: Q.137, L.156, V.157, S.158, L.165, G.166, H.168, E.170, D.222, S.224, D.268, D.270, R.334 Ligands: FE2.2, SIN.4 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:L.165 Hydrogen bonds: A:Q.137, A:L.156, A:S.158, A:E.170, A:D.222, A:S.224 Water bridges: A:G.166, A:G.166, A:G.166, A:W.167 Salt bridges: A:D.268, A:D.270, A:R.334

1 x SIN: SUCCINIC ACID(Non-covalent)

SIN.4: 12 residues within 4Å: Chain A: V.146, L.165, H.168, E.170, T.194, H.316, R.318, R.330, L.332, R.334 Ligands: FE2.2, ZZU.3 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.318 Salt bridges: A:H.168, A:H.316, A:R.330, A:R.334

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 3 residues within 4Å: Chain A: D.96, A.97, R.328 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.96, A:R.328

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Helmetag, V. et al., Structural Basis for the Erythro-Stereospecificity of the L-Arginine Oxygenase Vioc in Viomycin Biosynthesis. FEBS J. (2009)

Release Date

2009-06-23

Peptides

L-ARGININE BETA-HYDROXYLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

L-ARGININE BETA-HYDROXYLASE

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