SMTL ID : 2wbs.1

Crystal structure of the zinc finger domain of Klf4 bound to its target DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x DG- DA- DG- DG- DC- DG- DC: 5'-D(*GP*AP*GP*GP*CP*GP*CP)-3'(Non-covalent)

DG-DA-DG-DG-DC-DG-DC.1: 16 residues within 4Å: Chain A: W.45, F.47, R.49, E.52, R.55, H.56, K.59, R.77, H.80 Ligands: DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2, DG-DC-DG-DC-DC-DT-DC.2 Protein-ligand interaction information (PLIP) not available

1 x DG- DC- DG- DC- DC- DT- DC: 5'-D(*GP*CP*GP*CP*CP*TP*CP)-3'(Non-covalent)

DG-DC-DG-DC-DC-DT-DC.2: 14 residues within 4Å: Chain A: R.49, D.51, R.55, F.66, R.77, S.78, D.79 Ligands: DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1, DG-DA-DG-DG-DC-DG-DC.1 Protein-ligand interaction information (PLIP) not available

3 x ZN: ZINC ION(Non-covalent)

ZN.3: 4 residues within 4Å: Chain A: C.38, C.43, H.56, H.60 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.38, A:C.43, A:H.56, A:H.60 ZN.4: 4 residues within 4Å: Chain A: C.68, C.71, H.84, H.88 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.68, A:C.71, A:H.84, A:H.88 ZN.5: 5 residues within 4Å: Chain A: C.8, Y.10, C.13, H.26, H.30 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.8, A:C.13, A:H.26, A:H.30

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 2 residues within 4Å: Chain A: W.40, D.41 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.41

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Schuetz, A. et al., The Structure of the Klf4 DNA-Binding Domain Links to Self-Renewal and Macrophage Differentiation. Cell.Mol.Life Sci. (2011)

Release Date

2010-04-07

Peptides

KRUEPPEL-LIKE FACTOR 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

KRUEPPEL-LIKE FACTOR 4