SMTL ID : 2wcd.3 (2 other biounits)

CRYSTAL STRUCTURE OF THE ASSEMBLED CYTOLYSIN A PORE

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.29 Å

Oligo State

homo-12-mer

Ligands

24 x EMC: ETHYL MERCURY ION(Non-covalent)

EMC.1: 8 residues within 4Å: Chain A: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.2: 2 residues within 4Å: Chain A: T.97, C.291 Ligand excluded by PLIP EMC.3: 8 residues within 4Å: Chain B: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.4: 3 residues within 4Å: Chain B: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.5: 8 residues within 4Å: Chain C: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.6: 2 residues within 4Å: Chain C: T.97, C.291 Ligand excluded by PLIP EMC.7: 8 residues within 4Å: Chain D: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.8: 3 residues within 4Å: Chain D: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.9: 8 residues within 4Å: Chain E: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.10: 2 residues within 4Å: Chain E: T.97, C.291 Ligand excluded by PLIP EMC.11: 8 residues within 4Å: Chain F: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.12: 3 residues within 4Å: Chain F: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.13: 8 residues within 4Å: Chain G: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.14: 3 residues within 4Å: Chain G: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.15: 8 residues within 4Å: Chain H: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.16: 2 residues within 4Å: Chain H: T.97, C.291 Ligand excluded by PLIP EMC.17: 8 residues within 4Å: Chain I: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.18: 3 residues within 4Å: Chain I: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.19: 8 residues within 4Å: Chain J: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.20: 3 residues within 4Å: Chain J: T.97, C.291, Q.295 Ligand excluded by PLIP EMC.21: 8 residues within 4Å: Chain K: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.22: 2 residues within 4Å: Chain K: T.97, C.291 Ligand excluded by PLIP EMC.23: 8 residues within 4Å: Chain L: W.92, C.93, A.96, T.97, L.100, I.259, M.287, C.291 Ligand excluded by PLIP EMC.24: 3 residues within 4Å: Chain L: T.97, C.291, Q.295 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mueller, M. et al., The Structure of a Cytolytic Alpha-Helical Toxin Pore Reveals its Assembly Mechanism. Nature (2009)

Release Date

2009-05-05

Peptides

HEMOLYSIN E, CHROMOSOMAL: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
M

B
N

C
O

D
P

E
Q

F
R

G
S

H
T

I
U

J
V

K
W

L
X

Membrane

We predict this structure to be a membrane protein.
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HEMOLYSIN E, CHROMOSOMAL

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