SMTL ID : 2wcp.1

CRYSTAL STRUCTURE OF MOUSE CADHERIN-23 EC1-2

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.98 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.4, R.5, D.37, D.39, D.41, D.87 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.5, A:D.37, A:D.39, A:D.41, A:D.87 CA.2: 8 residues within 4Å: Chain A: E.22, E.74, D.102, V.103, D.105, N.106, D.138 Ligands: NA.4 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.22, A:D.102, A:V.103, A:D.105, A:D.138 CA.3: 6 residues within 4Å: Chain A: N.104, N.106, D.136, D.138, G.142, D.187 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.106, A:D.136, A:D.138, A:G.142, A:D.187

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 7 residues within 4Å: Chain A: E.22, D.72, E.74, D.105, N.106 Ligands: CA.2, GOL.9 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.72, A:R.73 NA.5: 2 residues within 4Å: Chain A: V.47, S.53 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.47, A:S.53 Water bridges: A:V.47 NA.6: 2 residues within 4Å: Chain A: D.136, G.143 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.136, A:G.143

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 4 residues within 4Å: Chain A: F.8, F.9, I.92, R.94 Ligand excluded by PLIP

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 8 residues within 4Å: Chain A: D.102, N.104, D.138, L.139, A.141, G.142, D.189, K.190 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:D.102, A:D.102, A:D.102, A:L.139, A:A.141, A:G.142, A:D.189 Water bridges: A:K.190, A:K.190 GOL.9: 7 residues within 4Å: Chain A: E.22, D.23, P.70, L.71, D.72, D.105 Ligands: NA.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.22, A:D.72 Water bridges: A:L.71, A:L.71

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sotomayor, M. et al., Structural Determinants of Cadherin-23 Function in Hearing and Deafness. Neuron (2010)

Release Date

2010-04-21

Peptides

CADHERIN-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CADHERIN-23

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