SMTL ID : 2wcv.2 (1 other biounit)

Crystal structure of bacterial FucU

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-10-mer

Ligands

10 x FUC: alpha-L-fucopyranose(Non-covalent)

FUC.1: 11 residues within 4Å: Chain A: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 Chain E: H.22, V.138 7 PLIP interactions: 1 interactions with chain E, 6 interactions with chain A Salt bridges: E:H.22, A:R.107 Hydrophobic interactions: A:Y.129 Hydrogen bonds: A:D.30, A:H.32, A:Y.129, A:N.131 FUC.2: 12 residues within 4Å: Chain A: H.22, Y.66, V.138 Chain B: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 7 PLIP interactions: 5 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:D.30, B:H.32, B:Y.129, B:N.131 Salt bridges: B:R.107, A:H.22 Hydrophobic interactions: A:Y.66 FUC.3: 12 residues within 4Å: Chain B: H.22, Y.66, V.138 Chain C: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 8 PLIP interactions: 6 interactions with chain C, 2 interactions with chain B Hydrophobic interactions: C:Y.129, B:Y.66 Hydrogen bonds: C:D.30, C:H.32, C:Y.129, C:N.131 Salt bridges: C:R.107, B:H.22 FUC.4: 12 residues within 4Å: Chain C: H.22, Y.66, V.138 Chain D: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 7 PLIP interactions: 2 interactions with chain C, 5 interactions with chain D Hydrophobic interactions: C:Y.66, D:Y.129 Salt bridges: C:H.22 Hydrogen bonds: D:D.30, D:H.32, D:Y.129, D:N.131 FUC.5: 11 residues within 4Å: Chain D: H.22, V.138 Chain E: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 7 PLIP interactions: 6 interactions with chain E, 1 interactions with chain D Hydrophobic interactions: E:Y.129 Hydrogen bonds: E:D.30, E:H.32, E:Y.129, E:N.131 Salt bridges: E:R.107, D:H.22 FUC.6: 11 residues within 4Å: Chain F: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 Chain J: H.22, V.138 10 PLIP interactions: 8 interactions with chain F, 2 interactions with chain J Hydrophobic interactions: F:Y.129 Hydrogen bonds: F:D.30, F:H.32, F:H.32, F:Y.111, F:Y.129, F:N.131, J:H.22 Salt bridges: F:R.107, J:H.22 FUC.7: 12 residues within 4Å: Chain F: H.22, Y.66, V.138 Chain G: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 9 PLIP interactions: 3 interactions with chain F, 6 interactions with chain G Hydrophobic interactions: F:Y.66 Hydrogen bonds: F:H.22, G:D.30, G:H.32, G:Y.111, G:Y.129, G:N.131 Salt bridges: F:H.22, G:R.107 FUC.8: 12 residues within 4Å: Chain G: H.22, Y.66, V.138 Chain H: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 10 PLIP interactions: 7 interactions with chain H, 3 interactions with chain G Hydrophobic interactions: H:Y.129, G:Y.66 Hydrogen bonds: H:D.30, H:H.32, H:Y.111, H:Y.129, H:N.131, G:H.22 Salt bridges: H:R.107, G:H.22 FUC.9: 12 residues within 4Å: Chain H: H.22, Y.66, V.138 Chain I: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 8 PLIP interactions: 6 interactions with chain I, 2 interactions with chain H Hydrophobic interactions: I:Y.129, H:Y.66 Hydrogen bonds: I:D.30, I:H.32, I:Y.111, I:Y.129, I:N.131 Salt bridges: H:H.22 FUC.10: 11 residues within 4Å: Chain I: H.22, V.138 Chain J: D.30, H.32, F.33, M.73, R.107, Y.111, K.128, Y.129, N.131 9 PLIP interactions: 7 interactions with chain J, 2 interactions with chain I Hydrophobic interactions: J:Y.129 Hydrogen bonds: J:D.30, J:H.32, J:Y.111, J:Y.129, J:N.131, I:H.22 Salt bridges: J:R.107, I:H.22

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lee, K.-H. et al., Crystal Structures and Enzyme Mechanism of a Dual Fucose Mutarotase/Ribose Pyranase. J.Mol.Biol. (2009)

Release Date

2009-11-10

Peptides

L-FUCOSE MUTAROTASE: ABCDEFGHIJ

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

B
G

C
H

D
I

E
J

F
F

G
G

H
H

I
I

J
J

L-FUCOSE MUTAROTASE

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