SMTL ID : 2wd0.1 (1 other biounit)

CRYSTAL STRUCTURE OF NONSYNDROMIC DEAFNESS (DFNB12) ASSOCIATED MUTANT D124G OF MOUSE CADHERIN-23 EC1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.74 Å

Oligo State

monomer

Ligands

3 x CA: CALCIUM ION(Non-covalent)

CA.1: 6 residues within 4Å: Chain A: N.104, N.106, D.136, D.138, G.142, D.187 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.106, A:D.136, A:D.138, A:G.142, A:D.187 CA.2: 7 residues within 4Å: Chain A: E.22, R.73, E.74, V.103, D.105, D.138 Ligands: CL.5 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.22, A:E.74, A:V.103, A:D.105, A:D.138 CA.3: 6 residues within 4Å: Chain A: N.4, R.5, D.37, D.39, D.41, D.87 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:R.5, A:D.37, A:D.39, A:D.41, A:D.87

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 5 residues within 4Å: Chain A: E.22, D.72, E.74, D.105, N.106 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.106

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 8 residues within 4Å: Chain A: E.22, R.73, E.74, G.102, V.103, D.138, L.139 Ligands: CA.2 Ligand excluded by PLIP CL.6: 4 residues within 4Å: Chain A: F.8, F.9, I.92, R.94 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sotomayor, M. et al., Structural Determinants of Cadherin-23 Function in Hearing and Deafness. Neuron (2010)

Release Date

2010-04-21

Peptides

CADHERIN-23: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CADHERIN-23

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