SMTL ID : 2wdy.1

Crystal structure of the Streptomyces coelicolor D111A AcpS mutant in complex with cofactor CoA at 1.4 A

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-trimer

Ligands

6 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 6 residues within 4Å: Chain A: S.129, A.131 Chain C: D.29, V.30 Ligands: MG.2, COA.4 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:V.30, H2O.8 MG.2: 3 residues within 4Å: Chain C: D.29 Ligands: MG.1, COA.4 2 PLIP interactions: 1 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.29, H2O.8 MG.5: 6 residues within 4Å: Chain A: D.29, V.30 Chain B: S.129, A.131 Ligands: MG.6, COA.8 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:V.30, H2O.16 MG.6: 3 residues within 4Å: Chain A: D.29 Ligands: MG.5, COA.8 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.29, H2O.16 MG.9: 6 residues within 4Å: Chain B: D.29, V.30 Chain C: S.129, A.131 Ligands: MG.10, COA.12 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:V.30, H2O.24 MG.10: 3 residues within 4Å: Chain B: D.29 Ligands: MG.9, COA.12 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.29, H2O.24

3 x NA: SODIUM ION(Non-functional Binders)

NA.3: 1 residues within 4Å: Chain A: G.110 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.110 NA.7: 1 residues within 4Å: Chain B: G.110 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.110 NA.11: 1 residues within 4Å: Chain C: G.110 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.110

3 x COA: COENZYME A(Non-covalent)

COA.4: 17 residues within 4Å: Chain A: S.68, R.72, G.101, G.102, R.103, P.104, L.128, S.129, H.130 Chain C: D.29, E.77, K.81, G.84, A.85, W.91 Ligands: MG.1, MG.2 14 PLIP interactions: 9 interactions with chain A, 5 interactions with chain C Hydrogen bonds: A:R.64, A:H.130, C:K.81, C:G.84 Water bridges: A:S.68, A:S.68, A:R.72, A:R.72 Salt bridges: A:R.72, A:H.130, A:H.130, C:K.81, C:K.81 Hydrophobic interactions: C:K.81 COA.8: 17 residues within 4Å: Chain A: D.29, E.77, K.81, G.84, A.85, W.91 Chain B: S.68, R.72, G.101, G.102, R.103, P.104, L.128, S.129, H.130 Ligands: MG.5, MG.6 14 PLIP interactions: 9 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:R.64, B:H.130, A:K.81, A:G.84 Water bridges: B:S.68, B:S.68, B:R.72, B:R.72 Salt bridges: B:R.72, B:H.130, B:H.130, A:K.81, A:K.81 Hydrophobic interactions: A:K.81 COA.12: 17 residues within 4Å: Chain B: D.29, E.77, K.81, G.84, A.85, W.91 Chain C: S.68, R.72, G.101, G.102, R.103, P.104, L.128, S.129, H.130 Ligands: MG.9, MG.10 14 PLIP interactions: 5 interactions with chain B, 9 interactions with chain C Hydrophobic interactions: B:K.81 Hydrogen bonds: B:K.81, B:G.84, C:R.64, C:H.130 Salt bridges: B:K.81, B:K.81, C:R.72, C:H.130, C:H.130 Water bridges: C:S.68, C:S.68, C:R.72, C:R.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dall'Aglio, P. et al., Analysis of Streptomyces Coelicolor Phosphopantetheinyl Transferase, Acps, Reveals the Basis for Relaxed Substrate Specificity. Biochemistry (2011)

Release Date

2010-04-21

Peptides

HOLO-[ACYL-CARRIER-PROTEIN] SYNTHASE: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

HOLO-[ACYL-CARRIER-PROTEIN] SYNTHASE