- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
NAD.2: 29 residues within 4Å:- Chain B: G.18, S.21, G.22, I.23, D.42, R.43, E.44, A.65, D.66, V.67, S.92, A.93, G.94, I.95, V.115, L.142, G.143, S.144, Y.159, K.163, P.189, G.190, Y.191, V.192, T.194, E.195, M.196, T.197
- Ligands: 1SP.3
18 PLIP interactions:18 interactions with chain B- Hydrophobic interactions: B:P.189
- Hydrogen bonds: B:S.21, B:S.21, B:I.23, B:R.43, B:R.43, B:D.66, B:D.66, B:V.67, B:S.92, B:G.94, B:Y.159, B:K.163, B:V.192, B:V.192, B:T.194, B:M.196
- Water bridges: B:G.24
NAD.5: 28 residues within 4Å:- Chain A: G.18, G.20, S.21, G.22, I.23, D.42, R.43, A.65, D.66, V.67, S.92, A.93, G.94, V.115, L.142, G.143, S.144, Y.159, K.163, P.189, G.190, Y.191, V.192, T.194, E.195, M.196, T.197
- Ligands: 1SP.6
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:P.189
- Hydrogen bonds: A:I.23, A:G.24, A:R.43, A:R.43, A:D.66, A:V.67, A:S.92, A:G.94, A:Y.159, A:K.163, A:V.192, A:V.192, A:T.194, A:E.195, A:M.196
- Water bridges: A:E.44, A:E.44, A:E.44
NAD.8: 29 residues within 4Å:- Chain D: G.18, S.21, G.22, I.23, D.42, R.43, E.44, A.65, D.66, V.67, S.92, A.93, G.94, I.95, V.115, L.142, G.143, S.144, Y.159, K.163, P.189, G.190, Y.191, V.192, T.194, E.195, M.196, T.197
- Ligands: 1SP.9
18 PLIP interactions:18 interactions with chain D- Hydrophobic interactions: D:P.189
- Hydrogen bonds: D:S.21, D:S.21, D:I.23, D:R.43, D:R.43, D:D.66, D:V.67, D:S.92, D:G.94, D:K.163, D:V.192, D:V.192, D:T.194, D:T.194, D:M.196, D:T.197
- Water bridges: D:G.24
NAD.11: 28 residues within 4Å:- Chain C: G.18, G.20, S.21, G.22, I.23, D.42, R.43, A.65, D.66, V.67, S.92, A.93, G.94, V.115, L.142, G.143, S.144, Y.159, K.163, P.189, G.190, Y.191, V.192, T.194, E.195, M.196, T.197
- Ligands: 1SP.12
18 PLIP interactions:18 interactions with chain C- Hydrophobic interactions: C:P.189
- Hydrogen bonds: C:I.23, C:G.24, C:R.43, C:R.43, C:D.66, C:V.67, C:S.92, C:G.94, C:K.163, C:V.192, C:V.192, C:T.194, C:T.194, C:E.195, C:M.196
- Water bridges: C:E.44, C:E.44
- 4 x 1SP: (2S)-pentane-1,2-diol
1SP.3: 10 residues within 4Å:- Chain B: L.98, S.144, M.145, S.146, N.151, A.156, Y.159, Y.191, T.197
- Ligands: NAD.2
5 PLIP interactions:5 interactions with chain B- Hydrophobic interactions: B:L.98, B:A.156, B:Y.159
- Hydrogen bonds: B:S.144, B:N.151
1SP.6: 8 residues within 4Å:- Chain A: S.144, M.145, S.146, N.151, Y.159, Y.191, T.197
- Ligands: NAD.5
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:Y.191
- Hydrogen bonds: A:S.144
1SP.9: 10 residues within 4Å:- Chain D: L.98, S.144, M.145, S.146, N.151, A.156, Y.159, Y.191, T.197
- Ligands: NAD.8
5 PLIP interactions:5 interactions with chain D- Hydrophobic interactions: D:L.98, D:A.156, D:Y.159
- Hydrogen bonds: D:S.144, D:N.151
1SP.12: 8 residues within 4Å:- Chain C: S.144, M.145, S.146, N.151, Y.159, Y.191, T.197
- Ligands: NAD.11
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:Y.191
- Hydrogen bonds: C:S.144
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carius, Y. et al., Structural Insight Into Substrate Differentiation of the Sugar-Metabolizing Enzyme Galactitol Dehydrogenase from Rhodobacter Sphaeroides D. J.Biol.Chem. (2010)
- Release Date
- 2010-03-31
- Peptides
- SHORT-CHAIN DEHYDROGENASE/REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x NAD: NICOTINAMIDE-ADENINE-DINUCLEOTIDE(Non-covalent)
- 4 x 1SP: (2S)-pentane-1,2-diol
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Carius, Y. et al., Structural Insight Into Substrate Differentiation of the Sugar-Metabolizing Enzyme Galactitol Dehydrogenase from Rhodobacter Sphaeroides D. J.Biol.Chem. (2010)
- Release Date
- 2010-03-31
- Peptides
- SHORT-CHAIN DEHYDROGENASE/REDUCTASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
CB
DC
CD
D