SMTL ID : 2we1.1

EBV dUTPase mutant Asp131Asn with bound dUMP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x UMP: 2'-DEOXYURIDINE 5'-MONOPHOSPHATE(Non-covalent)

UMP.1: 12 residues within 4Å: Chain A: L.68, H.79, G.81, I.82, I.83, D.84, Y.87, E.90, L.91, R.92, R.179, S.180 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:I.83, A:Y.87 Hydrogen bonds: A:I.82, A:D.84, A:R.92, A:R.92, A:S.180, A:S.180, A:S.180 Water bridges: A:R.179, A:R.179, A:R.179, A:R.179, A:G.181, A:Q.221 Salt bridges: A:R.179

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 6 residues within 4Å: Chain A: C.192, R.193, R.195, L.243, R.246, S.247 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.193, A:S.247 Water bridges: A:R.246 Salt bridges: A:R.195 SO4.3: 4 residues within 4Å: Chain A: P.170, H.171, R.173, K.227 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:H.171 Water bridges: A:R.173 Salt bridges: A:H.171, A:R.173, A:K.227 SO4.4: 3 residues within 4Å: Chain A: Q.27, K.111, H.113 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.27 Salt bridges: A:K.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freeman, L. et al., The Flexible Motif V of Epstein-Barr Virus Deoxyuridine 5'-Triphosphate Pyrophosphatase is Essential for Catalysis. J.Biol.Chem. (2009)

Release Date

2009-07-07

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE