SMTL ID : 2we3.1

EBV dUTPase inactive mutant deleted of motif V

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x DUT: DEOXYURIDINE-5'-TRIPHOSPHATE(Non-covalent)

DUT.1: 14 residues within 4Å: Chain A: L.68, H.79, G.81, I.82, I.83, D.84, Y.87, L.91, R.92, R.179, S.180, G.181, Q.221 Ligands: MG.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:I.83, A:Y.87 Hydrogen bonds: A:I.82, A:D.84, A:R.92, A:R.92, A:S.180, A:G.181 Water bridges: A:R.179, A:R.179, A:L.182, A:Q.221, A:Q.221 Salt bridges: A:R.179, A:R.179

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.2: 1 residues within 4Å: Ligands: DUT.1 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 4 residues within 4Å: Chain A: P.170, H.171, R.173, K.227 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.171 Salt bridges: A:H.171, A:R.173, A:K.227 SO4.4: 3 residues within 4Å: Chain A: R.179, R.217, R.218 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.218 Water bridges: A:R.179, A:R.218 Salt bridges: A:R.179, A:R.217, A:R.218

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Freeman, L. et al., The Flexible Motif V of Epstein-Barr Virus Deoxyuridine 5'-Triphosphate Pyrophosphatase is Essential for Catalysis. J.Biol.Chem. (2009)

Release Date

2009-07-07

Peptides

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE