SMTL ID : 2we8.1 (1 other biounit)

Crystal structure of Mycobacterium tuberculosis Rv0376c homologue from Mycobacterium smegmatis

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-dimer

Ligands

14 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 4 residues within 4Å: Chain A: G.61, Y.64, D.65 Ligands: GOL.6 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.65 GOL.2: 4 residues within 4Å: Chain A: R.307, P.333, G.335, D.337 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.307 Water bridges: A:D.337 GOL.3: 3 residues within 4Å: Chain A: P.37 Chain B: P.343 Ligands: GOL.4 No protein-ligand interaction detected (PLIP) GOL.4: 4 residues within 4Å: Chain B: F.215, P.343, T.346 Ligands: GOL.3 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.346, B:T.346 GOL.5: 3 residues within 4Å: Chain A: W.255, H.257, R.258 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.255, A:R.258 GOL.6: 4 residues within 4Å: Chain A: E.60, G.61, Y.64 Ligands: GOL.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.60 GOL.7: 4 residues within 4Å: Chain A: P.246, T.247, A.248, D.249 2 PLIP interactions: 2 interactions with chain A Water bridges: A:P.246, A:A.248 GOL.11: 4 residues within 4Å: Chain B: G.61, Y.64, D.65 Ligands: GOL.16 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.65 GOL.12: 4 residues within 4Å: Chain B: R.307, P.333, G.335, D.337 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.307 Water bridges: B:D.337, B:E.353 GOL.13: 3 residues within 4Å: Chain A: P.343 Chain B: P.37 Ligands: GOL.14 No protein-ligand interaction detected (PLIP) GOL.14: 4 residues within 4Å: Chain A: F.215, P.343, T.346 Ligands: GOL.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.346 GOL.15: 3 residues within 4Å: Chain B: W.255, H.257, R.258 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:W.255, B:R.258 GOL.16: 4 residues within 4Å: Chain B: E.60, G.61, Y.64 Ligands: GOL.11 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.60 GOL.17: 4 residues within 4Å: Chain B: P.246, T.247, A.248, D.249 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.249 Water bridges: B:P.246, B:A.248

6 x ACT: ACETATE ION(Non-functional Binders)

ACT.8: 4 residues within 4Å: Chain A: H.310, L.327, L.330, S.332 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.332 Salt bridges: A:H.310 ACT.9: 3 residues within 4Å: Chain A: D.337, G.339 Chain B: W.359 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.337 ACT.10: 7 residues within 4Å: Chain A: A.217, A.220, Q.221, F.245, P.246, T.247, A.248 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.217, A:T.247 Hydrogen bonds: A:A.217, A:T.247, A:A.248 ACT.18: 4 residues within 4Å: Chain B: H.310, L.327, L.330, S.332 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.332 Salt bridges: B:H.310 ACT.19: 3 residues within 4Å: Chain A: W.359 Chain B: D.337, G.339 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.337 ACT.20: 7 residues within 4Å: Chain B: A.217, A.220, Q.221, F.245, P.246, T.247, A.248 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:A.217, B:T.247 Hydrogen bonds: B:A.217, B:T.247, B:A.248

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cho, H.J. et al., Crystal Structure of Mycobacterium Tuberculosis Rv0376C Homologue from Mycobacterium Smegmatis. To be Published

Release Date

2010-04-07

Peptides

XANTHINE DEHYDROGENASE: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

XANTHINE DEHYDROGENASE

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