SMTL ID : 2wek.1 (1 other biounit)

Crystal structure of the human MGC45594 gene product in complex with diclofenac

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 32 residues within 4Å: Chain A: N.45, A.46, S.47, V.125, T.129, A.150, G.153, G.154, T.155, T.173, C.174, S.175, K.179, Y.194, S.217, V.218, I.239, G.240, F.241, I.242, S.243, Y.245, F.273, F.274, L.275, M.326, Y.327, G.329, N.331, G.333 Ligands: DIF.2, GOL.8 26 PLIP interactions: 26 interactions with chain A Hydrophobic interactions: A:V.125, A:T.129 Hydrogen bonds: A:A.46, A:S.47, A:G.154, A:T.155, A:S.175, A:K.179, A:S.217, A:I.239, A:I.242, A:Y.245, A:L.275, A:G.329, A:N.331, A:N.331 Water bridges: A:S.47, A:S.126, A:S.126, A:A.150, A:G.153, A:G.156, A:T.173, A:Y.194, A:Q.246 Salt bridges: A:K.179

4 x DIF: 2-[2,6-DICHLOROPHENYL)AMINO]BENZENEACETIC ACID(Non-covalent)(Covalent)

DIF.2: 11 residues within 4Å: Chain A: N.45, S.47, F.68, M.94, V.125, I.239, Y.245, F.274, N.276 Ligands: NAP.1, DIF.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.68, A:F.68, A:V.125 Hydrogen bonds: A:S.47, A:Y.245 Water bridges: A:S.47 pi-Stacking: A:F.274 DIF.3: 9 residues within 4Å: Chain A: Y.56, F.68, M.94, A.95, P.96, N.276, L.279 Ligands: DIF.2, DIF.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.68, A:L.279 pi-Stacking: A:Y.56 DIF.4: 7 residues within 4Å: Chain A: S.108, I.109, L.279, Y.282, Q.283 Ligands: DIF.3, CL.7 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.279, A:L.279, A:Y.282, A:Q.283 DIF.5: 9 residues within 4Å: Chain A: Y.131, L.134, K.135, L.140, L.162, K.165, A.166, H.288, M.292 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.134, A:K.135, A:L.162, A:A.166 pi-Stacking: A:Y.131 Halogen bonds: A:L.162

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.6: 8 residues within 4Å: Chain A: P.13, N.14, F.15, I.49, Q.246, V.323, N.324, Y.327 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:P.13, A:F.15, A:Q.246, A:N.324 Water bridges: A:N.14, A:N.14, A:N.14, A:N.324

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: S.108 Ligands: DIF.4 Ligand excluded by PLIP CL.11: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 7 residues within 4Å: Chain A: S.175, Y.194, K.195, Y.327, M.328, G.329 Ligands: NAP.1 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.175, A:K.195 Water bridges: A:Y.194, A:Y.194, A:Y.327 GOL.9: 7 residues within 4Å: Chain A: N.50, R.55, F.241, Y.245, T.249, G.250 Ligands: GOL.10 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.50, A:N.50, A:T.249 GOL.10: 3 residues within 4Å: Chain A: R.55, F.274 Ligands: GOL.9 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shafqat, N. et al., Crystal Structure of the Human Mgc45594 Gene Product in Complex with Diclofenac. To be Published

Release Date

2009-12-15

Peptides

ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ZINC-BINDING ALCOHOL DEHYDROGENASE DOMAIN-CONTAINING PROTEIN 2

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