SMTL ID : 2weq.1

Yeast Hsp90 N-terminal domain LI-IV mutant with Geldanamycin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

homo-dimer

Ligands

2 x GDM: GELDANAMYCIN(Non-covalent)

GDM.1: 18 residues within 4Å: Chain A: N.37, A.38, D.40, A.41, K.44, D.79, I.82, M.84, E.88, N.92, L.93, K.98, G.121, V.122, G.123, F.124, Y.125, T.171 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:N.37, A:A.41, A:K.44, A:I.82, A:N.92, A:L.93, A:Y.125 Hydrogen bonds: A:N.37, A:D.40, A:K.44, A:D.79, A:K.98, A:V.122, A:F.124 Water bridges: A:D.79, A:D.79, A:K.98, A:G.121, A:G.123, A:T.171, A:T.171 GDM.4: 18 residues within 4Å: Chain B: N.37, A.38, D.40, A.41, K.44, D.79, I.82, M.84, E.88, N.92, L.93, K.98, G.121, V.122, G.123, F.124, Y.125, T.171 18 PLIP interactions: 18 interactions with chain B Hydrophobic interactions: B:N.37, B:A.41, B:K.44, B:I.82, B:N.92, B:L.93, B:Y.125 Hydrogen bonds: B:N.37, B:D.40, B:K.44, B:D.79, B:K.98, B:V.122, B:F.124, B:T.171 Water bridges: B:K.98, B:G.121, B:G.123

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 5 residues within 4Å: Chain A: R.32, E.33, S.36, G.118, Q.119 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.36 Water bridges: A:R.32, A:E.33, A:S.36, A:N.37, A:M.116, A:G.118, A:G.118, A:G.123 GOL.3: 5 residues within 4Å: Chain A: E.187, V.209, K.211 Chain B: K.211 Ligands: GOL.6 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:K.211, B:K.211 Water bridges: A:K.191, A:K.191 GOL.5: 5 residues within 4Å: Chain B: R.32, E.33, S.36, G.118, Q.119 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:S.36 Water bridges: B:R.32, B:E.33, B:S.36, B:N.37, B:M.116, B:G.118, B:G.118, B:G.123 GOL.6: 5 residues within 4Å: Chain A: K.211 Chain B: E.187, V.209, K.211 Ligands: GOL.3 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:K.211, A:K.211 Water bridges: B:K.191, B:K.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prodromou, C. et al., Structural Basis of the Radicicol Resistance Displayed by a Fungal Hsp90. Acs Chem.Biol. (2009)

Release Date

2009-04-14

Peptides

ATP-DEPENDENT MOLECULAR CHAPERONE HSP82: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ATP-DEPENDENT MOLECULAR CHAPERONE HSP82

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