SMTL ID : 2wfx.1

Crystal structure of the complex between human hedgehog-interacting protein HIP and Sonic Hedgehog in the presence of calcium

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.102, D.109, H.144 Chain B: D.170 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Metal complexes: B:D.170, B:D.170, A:H.102, A:D.109, A:H.144

3 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: E.51, E.52, D.57, T.87, E.88 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.51, A:E.52, A:D.57, A:T.87, A:E.88 CA.3: 3 residues within 4Å: Chain A: E.52, E.88, D.91 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.52, A:E.88, A:D.91 CA.7: 1 residues within 4Å: Chain B: G.141 No protein-ligand interaction detected (PLIP)

3 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain B: C.410, C.412, G.418, D.419 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.419 NA.5: 6 residues within 4Å: Chain B: R.197, S.198, N.199, D.260, Y.261, E.262 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:R.197 NA.6: 4 residues within 4Å: Chain B: P.228, D.230, I.231, I.233 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bishop, B. et al., Structural Insights Into Hedgehog Ligand Sequestration by the Human Hedgehog-Interacting Protein Hip. Nat.Struct.Mol.Biol. (2009)

Release Date

2009-06-30

Peptides

SONIC HEDGEHOG PROTEIN N-PRODUCT: A
HEDGEHOG-INTERACTING PROTEIN: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

SONIC HEDGEHOG PROTEIN N-PRODUCT

HEDGEHOG-INTERACTING PROTEIN

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