SMTL ID : 2wgv.1

Crystal structure of the OXA-10 V117T mutant at pH 6.5 inhibited by a chloride ion

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 9 residues within 4Å: Chain A: T.89, R.91, G.92 Chain B: A.179, P.180, E.181, Y.182, E.209, E.211 7 PLIP interactions: 2 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:R.91, B:P.180, B:E.181, B:Y.182, B:E.209 Water bridges: A:L.90, B:K.210 GOL.2: 9 residues within 4Å: Chain A: A.179, P.180, E.181, Y.182, E.209, E.211 Chain B: T.89, R.91, G.92 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:T.89, B:R.91, B:R.91, A:Y.182, A:E.209, A:E.209, A:E.211 Water bridges: B:L.90, B:G.92 GOL.3: 5 residues within 4Å: Chain A: K.120, F.121, S.122, E.150, S.154 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.120, A:F.121, A:S.154 Water bridges: A:E.150

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 5 residues within 4Å: Chain A: S.49, K.52, T.99, F.102, W.136 Ligand excluded by PLIP CL.5: 3 residues within 4Å: Chain A: A.80, W.84, P.100 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: P.230, R.232, K.233 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: K.134, L.137, E.138 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain B: K.52, F.102, W.136 Ligand excluded by PLIP

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.8: 8 residues within 4Å: Chain A: A.48, S.49, S.97, K.187, T.188, G.189, F.190, R.232 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.190 Hydrogen bonds: A:S.49, A:S.49, A:S.97, A:T.99, A:T.99, A:T.188, A:G.189, A:F.190 Water bridges: A:S.49, A:T.99 Salt bridges: A:K.52, A:K.187, A:R.232, A:R.232

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 7 residues within 4Å: Chain B: S.49, S.97, K.187, T.188, G.189, F.190, R.232 10 PLIP interactions: 10 interactions with chain B Hydrogen bonds: B:S.49, B:S.97, B:S.97, B:T.188 Water bridges: B:T.188, B:T.188, B:F.190, B:F.190 Salt bridges: B:K.187, B:R.232

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vercheval, L. et al., Three Factors that Modulate the Activity of Class D Beta-Lactamases and Interfere with the Post- Translational Carboxylation of Lys70. Biochem.J. (2010)

Release Date

2010-05-19

Peptides

BETA-LACTAMASE OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-LACTAMASE OXA-10

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