SMTL ID : 2wgw.1

Crystal structure of the OXA-10 V117T mutant at pH 8.0

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 7 residues within 4Å: Chain A: S.49, S.97, K.187, T.188, G.189, F.190, R.232 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:S.49, A:S.97, A:S.97, A:T.188, A:T.188 Water bridges: A:K.187, A:F.190 Salt bridges: A:K.187, A:R.232 SO4.2: 2 residues within 4Å: Chain A: K.116, K.120 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.116 Salt bridges: A:K.116, A:K.120 SO4.8: 7 residues within 4Å: Chain B: S.49, S.97, K.187, T.188, G.189, F.190, R.232 8 PLIP interactions: 8 interactions with chain B Hydrogen bonds: B:S.49, B:S.97, B:T.188, B:T.188 Water bridges: B:K.187, B:F.190 Salt bridges: B:K.187, B:R.232 SO4.9: 5 residues within 4Å: Chain B: E.61, T.62, R.113, K.116, Y.117 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:Y.117 Water bridges: B:R.113, B:R.113 Salt bridges: B:R.113, B:K.116

9 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: K.120, F.121, S.122, E.150, F.151, S.154, L.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.120, A:E.150, A:S.154 GOL.4: 4 residues within 4Å: Chain A: R.107, G.110, E.111, I.132 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.111, A:E.111, A:E.111 Water bridges: A:V.112 GOL.5: 4 residues within 4Å: Chain A: W.74, G.76, P.78, E.85 No protein-ligand interaction detected (PLIP) GOL.6: 4 residues within 4Å: Chain A: T.62, G.63, V.64, R.113 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.113, A:R.113 Water bridges: A:G.63, A:E.108 GOL.7: 3 residues within 4Å: Chain A: S.129, G.130, G.131 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.130, A:G.131 GOL.10: 5 residues within 4Å: Chain B: L.25, S.32, C.33, A.34, Y.215 1 PLIP interactions: 1 interactions with chain B Water bridges: B:S.30 GOL.11: 8 residues within 4Å: Chain A: P.180, E.181, L.183, E.209, E.211 Chain B: T.89, R.91, G.92 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.91, A:E.209, A:E.211 Water bridges: B:L.90, A:P.180, A:E.211 GOL.12: 9 residues within 4Å: Chain A: T.89, R.91, G.92 Chain B: P.180, E.181, Y.182, L.183, E.209, E.211 11 PLIP interactions: 5 interactions with chain A, 6 interactions with chain B Hydrogen bonds: A:T.89, A:R.91, A:R.91, B:E.211, B:E.211 Water bridges: A:T.89, A:G.92, B:P.180, B:E.209, B:E.209, B:K.210 GOL.13: 7 residues within 4Å: Chain B: K.120, F.121, S.122, E.150, F.151, S.154, L.160 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:K.120, B:E.150, B:S.154

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vercheval, L. et al., Three Factors that Modulate the Activity of Class D Beta-Lactamases and Interfere with the Post-Translational Carboxylation of Lys70. Biochem.J. (2010)

Release Date

2010-05-19

Peptides

BETA-LACTAMASE OXA-10: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

BETA-LACTAMASE OXA-10

Related Entries With Identical Sequence