SMTL ID : 2wi9.2 (1 other biounit)

Selective oxidation of carbolide C-H bonds by engineered macrolide P450 monooxygenase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: K.92, M.112, L.113, H.120, R.124, F.131, L.260, A.263, T.267, T.268, L.271, P.309, V.310, A.313, T.314, R.316, A.366, F.367, G.368, I.371, H.372, C.374, I.375, G.376, A.380 Ligands: 1D2.2 18 PLIP interactions: 18 interactions with chain A, Hydrophobic interactions: A:L.113, A:L.113, A:F.131, A:T.267, A:L.271, A:P.309, A:V.310, A:F.367, A:I.375, A:A.380 Hydrogen bonds: A:T.314, A:T.314 Salt bridges: A:K.92, A:H.120, A:R.124, A:R.316, A:H.372 Metal complexes: A:C.374

1 x 1D2: CYCLODODECYL 3,4,6-TRIDEOXY-3-(DIMETHYLAMINO)-BETA-D-XYLO-HEXOPYRANOSIDE

1D2.2: 10 residues within 4Å: Chain A: F.198, V.262, A.263, E.266, T.267, V.310, T.314, M.414, I.415 Ligands: HEM.1 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.262, A:A.263, A:T.267, A:V.310, A:T.314, A:I.415 Salt bridges: A:E.266

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 1 residues within 4Å: Chain A: R.82 2 PLIP interactions: 2 interactions with chain A Water bridges: A:H.369 Salt bridges: A:R.82 SO4.4: 4 residues within 4Å: Chain A: R.80, D.323, L.324, D.325 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.325 Salt bridges: A:R.80 SO4.5: 5 residues within 4Å: Chain A: P.184, D.187, Y.217, R.220, S.224 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Li, S. et al., Selective Oxidation of Carbolide C-H Bonds by an Engineered Macrolide P450 Mono-Oxygenase. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-10-27

Peptides

CYTOCHROME P450 HYDROXYLASE PIKC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

CYTOCHROME P450 HYDROXYLASE PIKC

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