SMTL ID : 2wid.1

NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN ANALOGUE TA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 5 residues within 4Å: Chain A: G.336, F.337, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336 NAG-NAG-FUL.3: 6 residues within 4Å: Chain A: Y.237, N.241, N.245, L.249, F.278, P.281 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.249 Water bridges: A:F.278

1 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 5 residues within 4Å: Chain A: N.106, N.188, K.190, S.191, K.476 3 PLIP interactions: 3 interactions with chain A Water bridges: A:R.219, A:N.106 Hydrophobic interactions: A:N.106 Hydrogen bonds: A:N.188

1 x TUN: ETHYL HYDROGEN DIETHYLAMIDOPHOSPHATE

TUN.4: 10 residues within 4Å: Chain A: G.115, G.116, G.117, E.197, S.198, A.199, W.231, L.286, V.288, H.438 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.231, A:V.288 Hydrogen bonds: A:G.116, A:G.117, A:A.199

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 1 residues within 4Å: Chain A: F.525 No protein-ligand interaction detected (PLIP)

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 3 residues within 4Å: Chain A: S.487, T.488, T.508 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: D.378, Q.380, R.381 Ligand excluded by PLIP CL.9: 2 residues within 4Å: Chain A: R.515 Ligands: SO4.11 Ligand excluded by PLIP CL.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.16: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.7: 3 residues within 4Å: Chain A: C.66, L.88, S.89 No protein-ligand interaction detected (PLIP) SO4.10: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Q.316, A:N.414, A:N.415 Water bridges: A:N.415, A:N.415, A:N.415 SO4.11: 4 residues within 4Å: Chain A: K.323, Y.420, R.515 Ligands: CL.9 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:Y.420 Water bridges: A:K.323, A:R.515, A:R.515 Salt bridges: A:K.323, A:R.515

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 2 residues within 4Å: Chain A: R.14, N.57 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.57 NAG.13: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.469, A:E.482 Hydrogen bonds: A:N.485 NAG.14: 2 residues within 4Å: Chain A: N.256, E.259 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.256 Water bridges: A:N.256, A:T.258

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carletti, E. et al., Structure-activity analysis of aging and reactivation of human butyrylcholinesterase inhibited by analogues of tabun. Biochem. J. (2009)

Release Date

2009-05-19

Peptides

CHOLINESTERASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CHOLINESTERASE

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