SMTL ID : 2wif.1

AGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN ANALOGUE TA1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

homo-octamer

Ligands

16 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 7 residues within 4Å: Chain A: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.338, A:G.336 NAG-NAG-FUL.3: 6 residues within 4Å: Chain A: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.249 Hydrogen bonds: A:V.280 NAG-NAG-FUL.14: 7 residues within 4Å: Chain B: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:S.338, B:G.336 NAG-NAG-FUL.16: 6 residues within 4Å: Chain B: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.249 Hydrogen bonds: B:V.280 NAG-NAG-FUL.27: 7 residues within 4Å: Chain C: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:S.338, C:G.336 NAG-NAG-FUL.29: 6 residues within 4Å: Chain C: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.249 Hydrogen bonds: C:V.280 NAG-NAG-FUL.40: 7 residues within 4Å: Chain D: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:S.338, D:G.336 NAG-NAG-FUL.42: 6 residues within 4Å: Chain D: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.249 Hydrogen bonds: D:V.280 NAG-NAG-FUL.53: 7 residues within 4Å: Chain E: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:S.338, E:G.336 NAG-NAG-FUL.55: 6 residues within 4Å: Chain E: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:L.249 Hydrogen bonds: E:V.280 NAG-NAG-FUL.66: 7 residues within 4Å: Chain F: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:S.338, F:G.336 NAG-NAG-FUL.68: 6 residues within 4Å: Chain F: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.249 Hydrogen bonds: F:V.280 NAG-NAG-FUL.79: 7 residues within 4Å: Chain G: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:S.338, G:G.336 NAG-NAG-FUL.81: 6 residues within 4Å: Chain G: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:L.249 Hydrogen bonds: G:V.280 NAG-NAG-FUL.92: 7 residues within 4Å: Chain H: P.335, G.336, F.337, S.338, N.341, N.342, S.343 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:S.338, H:G.336 NAG-NAG-FUL.94: 6 residues within 4Å: Chain H: N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.249 Hydrogen bonds: H:V.280

8 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 6 residues within 4Å: Chain A: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 4 interactions with chain A, 1 interactions with chain F Hydrogen bonds: A:N.188, A:S.191, A:R.219, A:N.188, A:K.190 Water bridges: A:T.108, A:R.219, F:Q.311, A:N.106 Hydrophobic interactions: A:N.106 NAG-FUL.15: 6 residues within 4Å: Chain B: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain G Hydrogen bonds: B:N.188, B:S.191, B:R.219, B:N.188, B:K.190 Water bridges: B:R.219, G:Q.311, B:N.106 Hydrophobic interactions: B:N.106 NAG-FUL.28: 6 residues within 4Å: Chain C: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 4 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:N.188, C:S.191, C:R.219, C:N.188, C:K.190 Water bridges: C:T.108, C:R.219, E:Q.311, C:N.106 Hydrophobic interactions: C:N.106 NAG-FUL.41: 6 residues within 4Å: Chain D: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 1 interactions with chain H, 4 interactions with chain D Water bridges: H:Q.311, D:R.219, D:N.106 Hydrogen bonds: D:N.188, D:S.191, D:R.219, D:N.188, D:K.190 Hydrophobic interactions: D:N.106 NAG-FUL.54: 6 residues within 4Å: Chain E: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 4 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:N.188, E:S.191, E:R.219, E:N.188, E:K.190 Water bridges: E:T.108, E:R.219, A:Q.311, E:N.106 Hydrophobic interactions: E:N.106 NAG-FUL.67: 6 residues within 4Å: Chain F: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 1 interactions with chain C, 4 interactions with chain F Water bridges: C:Q.311, F:T.108, F:R.219, F:N.106 Hydrogen bonds: F:N.188, F:S.191, F:R.219, F:N.188, F:K.190 Hydrophobic interactions: F:N.106 NAG-FUL.80: 6 residues within 4Å: Chain G: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 4 interactions with chain G, 1 interactions with chain D Hydrogen bonds: G:N.188, G:S.191, G:R.219, G:N.188, G:K.190 Water bridges: G:R.219, D:Q.311, G:N.106 Hydrophobic interactions: G:N.106 NAG-FUL.93: 6 residues within 4Å: Chain H: N.106, N.188, K.190, S.191, R.219, K.476 5 PLIP interactions: 1 interactions with chain B, 4 interactions with chain H Water bridges: B:Q.311, H:R.219, H:N.106 Hydrogen bonds: H:N.188, H:S.191, H:R.219, H:N.188, H:K.190 Hydrophobic interactions: H:N.106

8 x NA: SODIUM ION(Non-functional Binders)

NA.4: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.43 No protein-ligand interaction detected (PLIP) NA.17: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.30 No protein-ligand interaction detected (PLIP) NA.30: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.17 No protein-ligand interaction detected (PLIP) NA.43: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.4 No protein-ligand interaction detected (PLIP) NA.56: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.95 No protein-ligand interaction detected (PLIP) NA.69: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.82 No protein-ligand interaction detected (PLIP) NA.82: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.69 No protein-ligand interaction detected (PLIP) NA.95: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.56 No protein-ligand interaction detected (PLIP)

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: S.487, T.488, T.508 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain A: D.378, Q.380, R.381 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.515 Chain G: R.509 Ligands: SO4.8 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: S.487, T.488, T.508 Ligand excluded by PLIP CL.20: 3 residues within 4Å: Chain B: D.378, Q.380, R.381 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: R.515 Chain F: R.509 Ligands: SO4.21 Ligand excluded by PLIP CL.31: 3 residues within 4Å: Chain C: S.487, T.488, T.508 Ligand excluded by PLIP CL.33: 3 residues within 4Å: Chain C: D.378, Q.380, R.381 Ligand excluded by PLIP CL.35: 3 residues within 4Å: Chain C: R.515 Chain H: R.509 Ligands: SO4.34 Ligand excluded by PLIP CL.44: 3 residues within 4Å: Chain D: S.487, T.488, T.508 Ligand excluded by PLIP CL.46: 3 residues within 4Å: Chain D: D.378, Q.380, R.381 Ligand excluded by PLIP CL.48: 3 residues within 4Å: Chain D: R.515 Chain E: R.509 Ligands: SO4.47 Ligand excluded by PLIP CL.57: 3 residues within 4Å: Chain E: S.487, T.488, T.508 Ligand excluded by PLIP CL.59: 3 residues within 4Å: Chain E: D.378, Q.380, R.381 Ligand excluded by PLIP CL.61: 3 residues within 4Å: Chain D: R.509 Chain E: R.515 Ligands: SO4.60 Ligand excluded by PLIP CL.70: 3 residues within 4Å: Chain F: S.487, T.488, T.508 Ligand excluded by PLIP CL.72: 3 residues within 4Å: Chain F: D.378, Q.380, R.381 Ligand excluded by PLIP CL.74: 3 residues within 4Å: Chain B: R.509 Chain F: R.515 Ligands: SO4.73 Ligand excluded by PLIP CL.83: 3 residues within 4Å: Chain G: S.487, T.488, T.508 Ligand excluded by PLIP CL.85: 3 residues within 4Å: Chain G: D.378, Q.380, R.381 Ligand excluded by PLIP CL.87: 3 residues within 4Å: Chain A: R.509 Chain G: R.515 Ligands: SO4.86 Ligand excluded by PLIP CL.96: 3 residues within 4Å: Chain H: S.487, T.488, T.508 Ligand excluded by PLIP CL.98: 3 residues within 4Å: Chain H: D.378, Q.380, R.381 Ligand excluded by PLIP CL.100: 3 residues within 4Å: Chain C: R.509 Chain H: R.515 Ligands: SO4.99 Ligand excluded by PLIP

8 x TN6: diethylphosphoramidic acid(Covalent)

TN6.6: 10 residues within 4Å: Chain A: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.231, A:V.288, A:F.329 Hydrogen bonds: A:G.116, A:G.117, A:A.199 TN6.19: 10 residues within 4Å: Chain B: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.231, B:V.288, B:F.329 Hydrogen bonds: B:G.116, B:G.117, B:A.199 TN6.32: 10 residues within 4Å: Chain C: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.231, C:V.288, C:F.329 Hydrogen bonds: C:G.116, C:G.117, C:A.199 TN6.45: 10 residues within 4Å: Chain D: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:W.231, D:V.288, D:F.329 Hydrogen bonds: D:G.116, D:G.117, D:A.199 TN6.58: 10 residues within 4Å: Chain E: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:W.231, E:V.288, E:F.329 Hydrogen bonds: E:G.116, E:G.117, E:A.199 TN6.71: 10 residues within 4Å: Chain F: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:W.231, F:V.288, F:F.329 Hydrogen bonds: F:G.116, F:G.117, F:A.199 TN6.84: 10 residues within 4Å: Chain G: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:W.231, G:V.288, G:F.329 Hydrogen bonds: G:G.116, G:G.117, G:A.199 TN6.97: 10 residues within 4Å: Chain H: G.115, G.116, G.117, S.198, A.199, W.231, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain H Hydrophobic interactions: H:W.231, H:V.288, H:F.329 Hydrogen bonds: H:G.116, H:G.117, H:A.199

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.8: 5 residues within 4Å: Chain A: K.323, Y.420, R.515 Chain G: R.509 Ligands: CL.9 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.21: 5 residues within 4Å: Chain B: K.323, Y.420, R.515 Chain F: R.509 Ligands: CL.22 Ligand excluded by PLIP SO4.23: 4 residues within 4Å: Chain B: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.34: 5 residues within 4Å: Chain C: K.323, Y.420, R.515 Chain H: R.509 Ligands: CL.35 Ligand excluded by PLIP SO4.36: 4 residues within 4Å: Chain C: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.47: 5 residues within 4Å: Chain D: K.323, Y.420, R.515 Chain E: R.509 Ligands: CL.48 Ligand excluded by PLIP SO4.49: 4 residues within 4Å: Chain D: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.60: 5 residues within 4Å: Chain D: R.509 Chain E: K.323, Y.420, R.515 Ligands: CL.61 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain E: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.73: 5 residues within 4Å: Chain B: R.509 Chain F: K.323, Y.420, R.515 Ligands: CL.74 Ligand excluded by PLIP SO4.75: 4 residues within 4Å: Chain F: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.86: 5 residues within 4Å: Chain A: R.509 Chain G: K.323, Y.420, R.515 Ligands: CL.87 Ligand excluded by PLIP SO4.88: 4 residues within 4Å: Chain G: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.99: 5 residues within 4Å: Chain C: R.509 Chain H: K.323, Y.420, R.515 Ligands: CL.100 Ligand excluded by PLIP SO4.101: 4 residues within 4Å: Chain H: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP

24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.11: 2 residues within 4Å: Chain A: R.14, N.57 Ligand excluded by PLIP NAG.12: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.13: 3 residues within 4Å: Chain A: N.256, T.258, E.259 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain B: R.14, N.57 Ligand excluded by PLIP NAG.25: 4 residues within 4Å: Chain B: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.26: 3 residues within 4Å: Chain B: N.256, T.258, E.259 Ligand excluded by PLIP NAG.37: 2 residues within 4Å: Chain C: R.14, N.57 Ligand excluded by PLIP NAG.38: 4 residues within 4Å: Chain C: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.39: 3 residues within 4Å: Chain C: N.256, T.258, E.259 Ligand excluded by PLIP NAG.50: 2 residues within 4Å: Chain D: R.14, N.57 Ligand excluded by PLIP NAG.51: 4 residues within 4Å: Chain D: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.52: 3 residues within 4Å: Chain D: N.256, T.258, E.259 Ligand excluded by PLIP NAG.63: 2 residues within 4Å: Chain E: R.14, N.57 Ligand excluded by PLIP NAG.64: 4 residues within 4Å: Chain E: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.65: 3 residues within 4Å: Chain E: N.256, T.258, E.259 Ligand excluded by PLIP NAG.76: 2 residues within 4Å: Chain F: R.14, N.57 Ligand excluded by PLIP NAG.77: 4 residues within 4Å: Chain F: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.78: 3 residues within 4Å: Chain F: N.256, T.258, E.259 Ligand excluded by PLIP NAG.89: 2 residues within 4Å: Chain G: R.14, N.57 Ligand excluded by PLIP NAG.90: 4 residues within 4Å: Chain G: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.91: 3 residues within 4Å: Chain G: N.256, T.258, E.259 Ligand excluded by PLIP NAG.102: 2 residues within 4Å: Chain H: R.14, N.57 Ligand excluded by PLIP NAG.103: 4 residues within 4Å: Chain H: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.104: 3 residues within 4Å: Chain H: N.256, T.258, E.259 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carletti, E. et al., Structure-activity analysis of aging and reactivation of human butyrylcholinesterase inhibited by analogues of tabun. Biochem. J. (2009)

Release Date

2009-05-19

Peptides

CHOLINESTERASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

CHOLINESTERASE

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