SMTL ID : 2wig.1

NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN ANALOGUE TA4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-octamer

Ligands

16 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 4 residues within 4Å: Chain A: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336 NAG-NAG-FUL.3: 7 residues within 4Å: Chain A: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.245, A:K.248, A:L.249 Hydrogen bonds: A:F.278 NAG-NAG-FUL.15: 4 residues within 4Å: Chain B: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.336 NAG-NAG-FUL.17: 7 residues within 4Å: Chain B: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:N.245, B:K.248, B:L.249 Hydrogen bonds: B:F.278 NAG-NAG-FUL.29: 4 residues within 4Å: Chain C: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.336 NAG-NAG-FUL.31: 7 residues within 4Å: Chain C: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:N.245, C:K.248, C:L.249 Hydrogen bonds: C:F.278 NAG-NAG-FUL.43: 4 residues within 4Å: Chain D: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.336 NAG-NAG-FUL.45: 7 residues within 4Å: Chain D: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain D Hydrophobic interactions: D:N.245, D:K.248, D:L.249 Hydrogen bonds: D:F.278 NAG-NAG-FUL.57: 4 residues within 4Å: Chain E: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.336 NAG-NAG-FUL.59: 7 residues within 4Å: Chain E: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain E Hydrophobic interactions: E:N.245, E:K.248, E:L.249 Hydrogen bonds: E:F.278 NAG-NAG-FUL.71: 4 residues within 4Å: Chain F: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:G.336 NAG-NAG-FUL.73: 7 residues within 4Å: Chain F: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain F Hydrophobic interactions: F:N.245, F:K.248, F:L.249 Hydrogen bonds: F:F.278 NAG-NAG-FUL.85: 4 residues within 4Å: Chain G: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:G.336 NAG-NAG-FUL.87: 7 residues within 4Å: Chain G: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain G Hydrophobic interactions: G:N.245, G:K.248, G:L.249 Hydrogen bonds: G:F.278 NAG-NAG-FUL.99: 4 residues within 4Å: Chain H: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:G.336 NAG-NAG-FUL.101: 7 residues within 4Å: Chain H: Y.237, N.241, N.245, K.248, L.249, F.278, P.281 4 PLIP interactions: 4 interactions with chain H Hydrophobic interactions: H:N.245, H:K.248, H:L.249 Hydrogen bonds: H:F.278

8 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 5 residues within 4Å: Chain A: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.190, A:R.219, A:N.188, A:K.190 Water bridges: A:T.108, A:N.106 Hydrophobic interactions: A:N.106 NAG-FUL.16: 5 residues within 4Å: Chain B: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.190, B:R.219, B:N.188, B:K.190 Water bridges: B:T.108, B:N.106 Hydrophobic interactions: B:N.106 NAG-FUL.30: 5 residues within 4Å: Chain C: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:K.190, C:R.219, C:N.188, C:K.190 Water bridges: C:T.108, C:N.106 Hydrophobic interactions: C:N.106 NAG-FUL.44: 5 residues within 4Å: Chain D: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.190, D:R.219, D:N.188, D:K.190 Water bridges: D:T.108, D:N.106 Hydrophobic interactions: D:N.106 NAG-FUL.58: 5 residues within 4Å: Chain E: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:K.190, E:R.219, E:N.188, E:K.190 Water bridges: E:T.108, E:N.106 Hydrophobic interactions: E:N.106 NAG-FUL.72: 5 residues within 4Å: Chain F: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:K.190, F:R.219, F:N.188, F:K.190 Water bridges: F:T.108, F:N.106 Hydrophobic interactions: F:N.106 NAG-FUL.86: 5 residues within 4Å: Chain G: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain G Hydrogen bonds: G:K.190, G:R.219, G:N.188, G:K.190 Water bridges: G:T.108, G:N.106 Hydrophobic interactions: G:N.106 NAG-FUL.100: 5 residues within 4Å: Chain H: N.106, N.188, K.190, S.191, K.476 4 PLIP interactions: 4 interactions with chain H Hydrogen bonds: H:K.190, H:R.219, H:N.188, H:K.190 Water bridges: H:T.108, H:N.106 Hydrophobic interactions: H:N.106

8 x TC3: ETHYL HYDROGEN METHYLAMIDOPHOSPHATE(Covalent)

TC3.4: 10 residues within 4Å: Chain A: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:W.231, A:L.286, A:V.288 Hydrogen bonds: A:G.116, A:G.117, A:A.199, A:H.438 TC3.18: 10 residues within 4Å: Chain B: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain B Hydrophobic interactions: B:W.231, B:L.286, B:V.288 Hydrogen bonds: B:G.116, B:G.117, B:A.199, B:H.438 TC3.32: 10 residues within 4Å: Chain C: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain C Hydrophobic interactions: C:W.231, C:L.286, C:V.288 Hydrogen bonds: C:G.116, C:G.117, C:A.199, C:H.438 TC3.46: 10 residues within 4Å: Chain D: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain D Hydrophobic interactions: D:W.231, D:L.286, D:V.288 Hydrogen bonds: D:G.116, D:G.117, D:A.199, D:H.438 TC3.60: 10 residues within 4Å: Chain E: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain E Hydrophobic interactions: E:W.231, E:L.286, E:V.288 Hydrogen bonds: E:G.116, E:G.117, E:A.199, E:H.438 TC3.74: 10 residues within 4Å: Chain F: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain F Hydrophobic interactions: F:W.231, F:L.286, F:V.288 Hydrogen bonds: F:G.116, F:G.117, F:A.199, F:H.438 TC3.88: 10 residues within 4Å: Chain G: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain G Hydrophobic interactions: G:W.231, G:L.286, G:V.288 Hydrogen bonds: G:G.116, G:G.117, G:A.199, G:H.438 TC3.102: 10 residues within 4Å: Chain H: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.398, H.438 7 PLIP interactions: 7 interactions with chain H Hydrophobic interactions: H:W.231, H:L.286, H:V.288 Hydrogen bonds: H:G.116, H:G.117, H:A.199, H:H.438

8 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.47 No protein-ligand interaction detected (PLIP) NA.19: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.33 No protein-ligand interaction detected (PLIP) NA.33: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.19 No protein-ligand interaction detected (PLIP) NA.47: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.5 No protein-ligand interaction detected (PLIP) NA.61: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.103 No protein-ligand interaction detected (PLIP) NA.75: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.89 No protein-ligand interaction detected (PLIP) NA.89: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.75 No protein-ligand interaction detected (PLIP) NA.103: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.61 No protein-ligand interaction detected (PLIP)

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: K.323, Y.420, R.515 Ligands: CL.9 Ligand excluded by PLIP SO4.10: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain B: K.323, Y.420, R.515 Ligands: CL.23 Ligand excluded by PLIP SO4.24: 4 residues within 4Å: Chain B: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.34: 4 residues within 4Å: Chain C: K.323, Y.420, R.515 Ligands: CL.37 Ligand excluded by PLIP SO4.38: 4 residues within 4Å: Chain C: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.48: 4 residues within 4Å: Chain D: K.323, Y.420, R.515 Ligands: CL.51 Ligand excluded by PLIP SO4.52: 4 residues within 4Å: Chain D: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.62: 4 residues within 4Å: Chain E: K.323, Y.420, R.515 Ligands: CL.65 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain E: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.76: 4 residues within 4Å: Chain F: K.323, Y.420, R.515 Ligands: CL.79 Ligand excluded by PLIP SO4.80: 4 residues within 4Å: Chain F: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.90: 4 residues within 4Å: Chain G: K.323, Y.420, R.515 Ligands: CL.93 Ligand excluded by PLIP SO4.94: 4 residues within 4Å: Chain G: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.104: 4 residues within 4Å: Chain H: K.323, Y.420, R.515 Ligands: CL.107 Ligand excluded by PLIP SO4.108: 4 residues within 4Å: Chain H: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP

32 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: H.77, H.126 Ligand excluded by PLIP CL.8: 3 residues within 4Å: Chain A: D.378, Q.380, R.381 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: R.515 Chain G: R.509 Ligands: SO4.6 Ligand excluded by PLIP CL.11: 2 residues within 4Å: Chain A: R.347, Q.351 Ligand excluded by PLIP CL.21: 2 residues within 4Å: Chain B: H.77, H.126 Ligand excluded by PLIP CL.22: 3 residues within 4Å: Chain B: D.378, Q.380, R.381 Ligand excluded by PLIP CL.23: 3 residues within 4Å: Chain B: R.515 Chain F: R.509 Ligands: SO4.20 Ligand excluded by PLIP CL.25: 2 residues within 4Å: Chain B: R.347, Q.351 Ligand excluded by PLIP CL.35: 2 residues within 4Å: Chain C: H.77, H.126 Ligand excluded by PLIP CL.36: 3 residues within 4Å: Chain C: D.378, Q.380, R.381 Ligand excluded by PLIP CL.37: 3 residues within 4Å: Chain C: R.515 Chain H: R.509 Ligands: SO4.34 Ligand excluded by PLIP CL.39: 2 residues within 4Å: Chain C: R.347, Q.351 Ligand excluded by PLIP CL.49: 2 residues within 4Å: Chain D: H.77, H.126 Ligand excluded by PLIP CL.50: 3 residues within 4Å: Chain D: D.378, Q.380, R.381 Ligand excluded by PLIP CL.51: 3 residues within 4Å: Chain D: R.515 Chain E: R.509 Ligands: SO4.48 Ligand excluded by PLIP CL.53: 2 residues within 4Å: Chain D: R.347, Q.351 Ligand excluded by PLIP CL.63: 2 residues within 4Å: Chain E: H.77, H.126 Ligand excluded by PLIP CL.64: 3 residues within 4Å: Chain E: D.378, Q.380, R.381 Ligand excluded by PLIP CL.65: 3 residues within 4Å: Chain D: R.509 Chain E: R.515 Ligands: SO4.62 Ligand excluded by PLIP CL.67: 2 residues within 4Å: Chain E: R.347, Q.351 Ligand excluded by PLIP CL.77: 2 residues within 4Å: Chain F: H.77, H.126 Ligand excluded by PLIP CL.78: 3 residues within 4Å: Chain F: D.378, Q.380, R.381 Ligand excluded by PLIP CL.79: 3 residues within 4Å: Chain B: R.509 Chain F: R.515 Ligands: SO4.76 Ligand excluded by PLIP CL.81: 2 residues within 4Å: Chain F: R.347, Q.351 Ligand excluded by PLIP CL.91: 2 residues within 4Å: Chain G: H.77, H.126 Ligand excluded by PLIP CL.92: 3 residues within 4Å: Chain G: D.378, Q.380, R.381 Ligand excluded by PLIP CL.93: 3 residues within 4Å: Chain A: R.509 Chain G: R.515 Ligands: SO4.90 Ligand excluded by PLIP CL.95: 2 residues within 4Å: Chain G: R.347, Q.351 Ligand excluded by PLIP CL.105: 2 residues within 4Å: Chain H: H.77, H.126 Ligand excluded by PLIP CL.106: 3 residues within 4Å: Chain H: D.378, Q.380, R.381 Ligand excluded by PLIP CL.107: 3 residues within 4Å: Chain C: R.509 Chain H: R.515 Ligands: SO4.104 Ligand excluded by PLIP CL.109: 2 residues within 4Å: Chain H: R.347, Q.351 Ligand excluded by PLIP

24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.12: 2 residues within 4Å: Chain A: R.14, N.57 Ligand excluded by PLIP NAG.13: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.14: 2 residues within 4Å: Chain A: N.256, E.259 Ligand excluded by PLIP NAG.26: 2 residues within 4Å: Chain B: R.14, N.57 Ligand excluded by PLIP NAG.27: 4 residues within 4Å: Chain B: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.28: 2 residues within 4Å: Chain B: N.256, E.259 Ligand excluded by PLIP NAG.40: 2 residues within 4Å: Chain C: R.14, N.57 Ligand excluded by PLIP NAG.41: 4 residues within 4Å: Chain C: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.42: 2 residues within 4Å: Chain C: N.256, E.259 Ligand excluded by PLIP NAG.54: 2 residues within 4Å: Chain D: R.14, N.57 Ligand excluded by PLIP NAG.55: 4 residues within 4Å: Chain D: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.56: 2 residues within 4Å: Chain D: N.256, E.259 Ligand excluded by PLIP NAG.68: 2 residues within 4Å: Chain E: R.14, N.57 Ligand excluded by PLIP NAG.69: 4 residues within 4Å: Chain E: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.70: 2 residues within 4Å: Chain E: N.256, E.259 Ligand excluded by PLIP NAG.82: 2 residues within 4Å: Chain F: R.14, N.57 Ligand excluded by PLIP NAG.83: 4 residues within 4Å: Chain F: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.84: 2 residues within 4Å: Chain F: N.256, E.259 Ligand excluded by PLIP NAG.96: 2 residues within 4Å: Chain G: R.14, N.57 Ligand excluded by PLIP NAG.97: 4 residues within 4Å: Chain G: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.98: 2 residues within 4Å: Chain G: N.256, E.259 Ligand excluded by PLIP NAG.110: 2 residues within 4Å: Chain H: R.14, N.57 Ligand excluded by PLIP NAG.111: 4 residues within 4Å: Chain H: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.112: 2 residues within 4Å: Chain H: N.256, E.259 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carletti, E. et al., Structure-activity analysis of aging and reactivation of human butyrylcholinesterase inhibited by analogues of tabun. Biochem. J. (2009)

Release Date

2009-05-19

Peptides

CHOLINESTERASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

CHOLINESTERASE

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