SMTL ID : 2wij.1

NONAGED FORM OF HUMAN BUTYRYLCHOLINESTERASE INHIBITED BY TABUN ANALOGUE TA5

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-octamer

Ligands

16 x NAG- NAG- FUL: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[beta-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUL.1: 4 residues within 4Å: Chain A: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.336 NAG-NAG-FUL.3: 7 residues within 4Å: Chain A: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.249 Hydrogen bonds: A:F.278 NAG-NAG-FUL.13: 4 residues within 4Å: Chain B: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:G.336 NAG-NAG-FUL.15: 7 residues within 4Å: Chain B: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:L.249 Hydrogen bonds: B:F.278 NAG-NAG-FUL.25: 4 residues within 4Å: Chain C: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:G.336 NAG-NAG-FUL.27: 7 residues within 4Å: Chain C: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain C Hydrophobic interactions: C:L.249 Hydrogen bonds: C:F.278 NAG-NAG-FUL.37: 4 residues within 4Å: Chain D: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:G.336 NAG-NAG-FUL.39: 7 residues within 4Å: Chain D: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain D Hydrophobic interactions: D:L.249 Hydrogen bonds: D:F.278 NAG-NAG-FUL.49: 4 residues within 4Å: Chain E: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:G.336 NAG-NAG-FUL.51: 7 residues within 4Å: Chain E: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:L.249 Hydrogen bonds: E:F.278 NAG-NAG-FUL.61: 4 residues within 4Å: Chain F: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:G.336 NAG-NAG-FUL.63: 7 residues within 4Å: Chain F: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain F Hydrophobic interactions: F:L.249 Hydrogen bonds: F:F.278 NAG-NAG-FUL.73: 4 residues within 4Å: Chain G: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain G Hydrogen bonds: G:G.336 NAG-NAG-FUL.75: 7 residues within 4Å: Chain G: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain G Hydrophobic interactions: G:L.249 Hydrogen bonds: G:F.278 NAG-NAG-FUL.85: 4 residues within 4Å: Chain H: G.336, S.338, N.341, N.342 1 PLIP interactions: 1 interactions with chain H Hydrogen bonds: H:G.336 NAG-NAG-FUL.87: 7 residues within 4Å: Chain H: Y.237, N.241, N.245, L.249, F.278, V.280, P.281 2 PLIP interactions: 2 interactions with chain H Hydrophobic interactions: H:L.249 Hydrogen bonds: H:F.278

8 x NAG- FUL: beta-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUL.2: 4 residues within 4Å: Chain A: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.188, A:S.191, A:N.188 Water bridges: A:T.108, A:R.219, A:R.219, A:K.476, A:K.105, A:N.106, A:K.190 Hydrophobic interactions: A:N.106 NAG-FUL.14: 4 residues within 4Å: Chain B: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.188, B:S.191, B:N.188 Water bridges: B:R.219, B:R.219, B:K.476, B:K.105, B:N.106, B:K.190 Hydrophobic interactions: B:N.106 NAG-FUL.26: 4 residues within 4Å: Chain C: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain C Hydrogen bonds: C:N.188, C:S.191, C:N.188 Water bridges: C:T.108, C:R.219, C:R.219, C:K.476, C:K.105, C:N.106, C:K.190 Hydrophobic interactions: C:N.106 NAG-FUL.38: 4 residues within 4Å: Chain D: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain D Hydrogen bonds: D:N.188, D:S.191, D:N.188 Water bridges: D:R.219, D:R.219, D:K.476, D:K.105, D:N.106, D:K.190 Hydrophobic interactions: D:N.106 NAG-FUL.50: 4 residues within 4Å: Chain E: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain E Hydrogen bonds: E:N.188, E:S.191, E:N.188 Water bridges: E:T.108, E:R.219, E:R.219, E:K.476, E:K.105, E:N.106, E:K.190 Hydrophobic interactions: E:N.106 NAG-FUL.62: 4 residues within 4Å: Chain F: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain F Hydrogen bonds: F:N.188, F:S.191, F:N.188 Water bridges: F:T.108, F:R.219, F:R.219, F:K.476, F:K.105, F:N.106, F:K.190 Hydrophobic interactions: F:N.106 NAG-FUL.74: 4 residues within 4Å: Chain G: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain G Hydrogen bonds: G:N.188, G:S.191, G:N.188 Water bridges: G:R.219, G:R.219, G:K.476, G:K.105, G:N.106, G:K.190 Hydrophobic interactions: G:N.106 NAG-FUL.86: 4 residues within 4Å: Chain H: N.106, N.188, K.190, S.191 5 PLIP interactions: 5 interactions with chain H Hydrogen bonds: H:N.188, H:S.191, H:N.188 Water bridges: H:R.219, H:R.219, H:K.476, H:K.105, H:N.106, H:K.190 Hydrophobic interactions: H:N.106

8 x TN7: ethyl hydrogen ethylamidophosphate(Covalent)

TN7.4: 11 residues within 4Å: Chain A: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.231, A:V.288, A:F.329 Hydrogen bonds: A:G.116, A:G.117, A:A.199 TN7.16: 11 residues within 4Å: Chain B: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:W.231, B:V.288, B:F.329 Hydrogen bonds: B:G.116, B:G.117, B:A.199 TN7.28: 11 residues within 4Å: Chain C: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain C Hydrophobic interactions: C:W.231, C:V.288, C:F.329 Hydrogen bonds: C:G.116, C:G.117, C:A.199 TN7.40: 11 residues within 4Å: Chain D: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain D Hydrophobic interactions: D:W.231, D:V.288, D:F.329 Hydrogen bonds: D:G.116, D:G.117, D:A.199 TN7.52: 11 residues within 4Å: Chain E: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain E Hydrophobic interactions: E:W.231, E:V.288, E:F.329 Hydrogen bonds: E:G.116, E:G.117, E:A.199 TN7.64: 11 residues within 4Å: Chain F: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain F Hydrophobic interactions: F:W.231, F:V.288, F:F.329 Hydrogen bonds: F:G.116, F:G.117, F:A.199 TN7.76: 11 residues within 4Å: Chain G: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain G Hydrophobic interactions: G:W.231, G:V.288, G:F.329 Hydrogen bonds: G:G.116, G:G.117, G:A.199 TN7.88: 11 residues within 4Å: Chain H: G.115, G.116, G.117, S.198, A.199, W.231, L.286, V.288, F.329, F.398, H.438 6 PLIP interactions: 6 interactions with chain H Hydrophobic interactions: H:W.231, H:V.288, H:F.329 Hydrogen bonds: H:G.116, H:G.117, H:A.199

8 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.41 No protein-ligand interaction detected (PLIP) NA.17: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.29 No protein-ligand interaction detected (PLIP) NA.29: 3 residues within 4Å: Chain B: F.525 Chain C: F.525 Ligands: NA.17 No protein-ligand interaction detected (PLIP) NA.41: 3 residues within 4Å: Chain A: F.525 Chain D: F.525 Ligands: NA.5 No protein-ligand interaction detected (PLIP) NA.53: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.89 No protein-ligand interaction detected (PLIP) NA.65: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.77 No protein-ligand interaction detected (PLIP) NA.77: 3 residues within 4Å: Chain F: F.525 Chain G: F.525 Ligands: NA.65 No protein-ligand interaction detected (PLIP) NA.89: 3 residues within 4Å: Chain E: F.525 Chain H: F.525 Ligands: NA.53 No protein-ligand interaction detected (PLIP)

16 x SO4: SULFATE ION(Non-functional Binders)

SO4.6: 4 residues within 4Å: Chain A: K.323, Y.420, R.515 Ligands: CL.7 Ligand excluded by PLIP SO4.8: 4 residues within 4Å: Chain A: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.18: 4 residues within 4Å: Chain B: K.323, Y.420, R.515 Ligands: CL.19 Ligand excluded by PLIP SO4.20: 4 residues within 4Å: Chain B: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.30: 4 residues within 4Å: Chain C: K.323, Y.420, R.515 Ligands: CL.31 Ligand excluded by PLIP SO4.32: 4 residues within 4Å: Chain C: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.42: 4 residues within 4Å: Chain D: K.323, Y.420, R.515 Ligands: CL.43 Ligand excluded by PLIP SO4.44: 4 residues within 4Å: Chain D: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.54: 4 residues within 4Å: Chain E: K.323, Y.420, R.515 Ligands: CL.55 Ligand excluded by PLIP SO4.56: 4 residues within 4Å: Chain E: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.66: 4 residues within 4Å: Chain F: K.323, Y.420, R.515 Ligands: CL.67 Ligand excluded by PLIP SO4.68: 4 residues within 4Å: Chain F: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.78: 4 residues within 4Å: Chain G: K.323, Y.420, R.515 Ligands: CL.79 Ligand excluded by PLIP SO4.80: 4 residues within 4Å: Chain G: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP SO4.90: 4 residues within 4Å: Chain H: K.323, Y.420, R.515 Ligands: CL.91 Ligand excluded by PLIP SO4.92: 4 residues within 4Å: Chain H: Q.316, G.413, N.414, N.415 Ligand excluded by PLIP

16 x CL: CHLORIDE ION(Non-functional Binders)

CL.7: 2 residues within 4Å: Chain A: R.515 Ligands: SO4.6 Ligand excluded by PLIP CL.9: 4 residues within 4Å: Chain A: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain B: R.515 Ligands: SO4.18 Ligand excluded by PLIP CL.21: 4 residues within 4Å: Chain B: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.31: 2 residues within 4Å: Chain C: R.515 Ligands: SO4.30 Ligand excluded by PLIP CL.33: 4 residues within 4Å: Chain C: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.43: 2 residues within 4Å: Chain D: R.515 Ligands: SO4.42 Ligand excluded by PLIP CL.45: 4 residues within 4Å: Chain D: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.55: 2 residues within 4Å: Chain E: R.515 Ligands: SO4.54 Ligand excluded by PLIP CL.57: 4 residues within 4Å: Chain E: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.67: 2 residues within 4Å: Chain F: R.515 Ligands: SO4.66 Ligand excluded by PLIP CL.69: 4 residues within 4Å: Chain F: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.79: 2 residues within 4Å: Chain G: R.515 Ligands: SO4.78 Ligand excluded by PLIP CL.81: 4 residues within 4Å: Chain G: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP CL.91: 2 residues within 4Å: Chain H: R.515 Ligands: SO4.90 Ligand excluded by PLIP CL.93: 4 residues within 4Å: Chain H: V.377, D.378, Q.380, R.381 Ligand excluded by PLIP

24 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.10: 2 residues within 4Å: Chain A: R.14, N.57 Ligand excluded by PLIP NAG.11: 4 residues within 4Å: Chain A: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.12: 2 residues within 4Å: Chain A: N.256, T.258 Ligand excluded by PLIP NAG.22: 2 residues within 4Å: Chain B: R.14, N.57 Ligand excluded by PLIP NAG.23: 4 residues within 4Å: Chain B: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.24: 2 residues within 4Å: Chain B: N.256, T.258 Ligand excluded by PLIP NAG.34: 2 residues within 4Å: Chain C: R.14, N.57 Ligand excluded by PLIP NAG.35: 4 residues within 4Å: Chain C: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.36: 2 residues within 4Å: Chain C: N.256, T.258 Ligand excluded by PLIP NAG.46: 2 residues within 4Å: Chain D: R.14, N.57 Ligand excluded by PLIP NAG.47: 4 residues within 4Å: Chain D: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.48: 2 residues within 4Å: Chain D: N.256, T.258 Ligand excluded by PLIP NAG.58: 2 residues within 4Å: Chain E: R.14, N.57 Ligand excluded by PLIP NAG.59: 4 residues within 4Å: Chain E: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.60: 2 residues within 4Å: Chain E: N.256, T.258 Ligand excluded by PLIP NAG.70: 2 residues within 4Å: Chain F: R.14, N.57 Ligand excluded by PLIP NAG.71: 4 residues within 4Å: Chain F: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.72: 2 residues within 4Å: Chain F: N.256, T.258 Ligand excluded by PLIP NAG.82: 2 residues within 4Å: Chain G: R.14, N.57 Ligand excluded by PLIP NAG.83: 4 residues within 4Å: Chain G: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.84: 2 residues within 4Å: Chain G: N.256, T.258 Ligand excluded by PLIP NAG.94: 2 residues within 4Å: Chain H: R.14, N.57 Ligand excluded by PLIP NAG.95: 4 residues within 4Å: Chain H: R.465, K.469, E.482, N.485 Ligand excluded by PLIP NAG.96: 2 residues within 4Å: Chain H: N.256, T.258 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carletti, E. et al., Structure-activity analysis of aging and reactivation of human butyrylcholinesterase inhibited by analogues of tabun. Biochem. J. (2009)

Release Date

2009-05-19

Peptides

CHOLINESTERASE: ABCDEFGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

CHOLINESTERASE

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