SMTL ID : 2wiw.1

Crystal structures of Holliday junction resolvases from Archaeoglobus fulgidus bound to DNA substrate

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

homo-dimer

Ligands

4 x HEZ: HEXANE-1,6-DIOL(Non-covalent)

HEZ.1: 8 residues within 4Å: Chain A: L.16, W.20, F.24, A.25, A.26 Chain B: F.37, P.38, F.76 4 PLIP interactions: 3 interactions with chain A, 1 interactions with chain B Hydrophobic interactions: A:W.20, A:A.25, A:A.26 Hydrogen bonds: B:P.38 HEZ.2: 4 residues within 4Å: Chain A: E.71, V.74, V.100, R.105 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.74 Hydrogen bonds: A:V.100 HEZ.4: 5 residues within 4Å: Chain B: E.60, L.61, P.91, K.93, E.114 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.60, B:L.61, B:L.61, B:P.91 HEZ.6: 6 residues within 4Å: Chain B: Y.64 Chain C: C.8, C.9 Chain D: G.3, A.4, T.5 No protein-ligand interaction detected (PLIP)

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: G.120, E.125 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.120 GOL.5: 6 residues within 4Å: Chain B: R.105, T.106, E.107, K.108, N.109, F.110 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Carolis, C. et al., Crystal Structures of Holliday Junction Resolvases from Archaeoglobus Fulgidus Bound to DNA Substrate. To be Published

Release Date

2009-05-26

Peptides

HJC: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

HJC

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