SMTL ID : 2wjk.1

Bacteriorhodopsin mutant E204D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-trimer

Ligands

3 x RET: RETINAL(Covalent)

RET.1: 15 residues within 4Å: Chain A: W.86, T.89, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:W.86, A:T.90, A:M.145, A:W.182, A:Y.185, A:Y.185, A:Y.185, A:P.186, A:W.189, A:A.215, A:K.216 RET.3: 15 residues within 4Å: Chain B: W.86, T.89, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:W.86, B:T.90, B:M.145, B:W.182, B:Y.185, B:Y.185, B:Y.185, B:P.186, B:W.189, B:A.215, B:K.216 RET.5: 15 residues within 4Å: Chain C: W.86, T.89, T.90, M.118, W.138, S.141, T.142, M.145, W.182, Y.185, P.186, W.189, D.212, A.215, K.216 11 PLIP interactions: 11 interactions with chain C Hydrophobic interactions: C:W.86, C:T.90, C:M.145, C:W.182, C:Y.185, C:Y.185, C:Y.185, C:P.186, C:W.189, C:A.215, C:K.216

3 x LI1: 1-[2,6,10.14-TETRAMETHYL-HEXADECAN-16-YL]-2-[2,10,14-TRIMETHYLHEXADECAN-16-YL]GLYCEROL(Non-covalent)

LI1.2: 11 residues within 4Å: Chain A: A.114, I.117, A.144, Y.147 Chain C: T.24, L.28, Y.43, A.44, T.47, A.51, F.54 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain C Hydrophobic interactions: A:A.114, A:I.117, A:A.144, A:Y.147, A:Y.147, C:T.24, C:L.28, C:Y.43, C:T.47, C:F.54 LI1.4: 11 residues within 4Å: Chain A: T.24, L.28, Y.43, A.44, T.47, A.51, F.54 Chain B: A.114, I.117, A.144, Y.147 10 PLIP interactions: 5 interactions with chain A, 5 interactions with chain B Hydrophobic interactions: A:T.24, A:L.28, A:Y.43, A:T.47, A:F.54, B:A.114, B:I.117, B:A.144, B:Y.147, B:Y.147 LI1.6: 11 residues within 4Å: Chain B: T.24, L.28, Y.43, A.44, T.47, A.51, F.54 Chain C: A.114, I.117, A.144, Y.147 9 PLIP interactions: 4 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:T.24, B:Y.43, B:T.47, B:F.54, C:A.114, C:I.117, C:A.144, C:Y.147, C:Y.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wolf, S. et al., Directional proton transfer in membrane proteins achieved through protonated protein-bound water molecules: a proton diode. Angew. Chem. Int. Ed. Engl. (2010)

Release Date

2010-08-25

Peptides

Bacteriorhodopsin: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

Membrane

We predict this structure to be a membrane protein.
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Bacteriorhodopsin