SMTL ID : 2wjq.1

NanC porin structure in hexagonal crystal form.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: W.110, R.124, N.126 Ligand excluded by PLIP CL.2: 4 residues within 4Å: Chain A: R.158, K.163, K.164, W.165 Ligand excluded by PLIP

9 x OCT: N-OCTANE(Non-covalent)(Non-functional Binders)

OCT.3: 4 residues within 4Å: Chain A: V.5, G.7, I.209, V.211 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.5, A:I.209, A:V.211 OCT.4: 1 residues within 4Å: Chain A: Y.207 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.207, A:Y.207 OCT.5: 3 residues within 4Å: Chain A: Y.9, Y.16 Ligands: LDA.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.9, A:Y.9 OCT.6: 3 residues within 4Å: Chain A: Y.187, Y.207 Ligands: OCT.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.187, A:Y.187, A:Y.187 OCT.7: 4 residues within 4Å: Chain A: F.171, Y.187 Ligands: OCT.6, OCT.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.171, A:Y.187 OCT.8: 4 residues within 4Å: Chain A: L.65, D.66, W.69 Ligands: OCT.9 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.65, A:W.69 OCT.9: 2 residues within 4Å: Ligands: OCT.8, LDA.14 No protein-ligand interaction detected (PLIP) OCT.10: 3 residues within 4Å: Chain A: W.146, Y.189 Ligands: OCT.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.146, A:W.146, A:Y.189 OCT.15: 1 residues within 4Å: Chain A: F.102 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.102

4 x LDA: LAURYL DIMETHYLAMINE-N-OXIDE(Non-covalent)

LDA.11: 5 residues within 4Å: Chain A: L.20, V.22, M.34, S.36, V.55 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.22, A:V.55 LDA.12: 8 residues within 4Å: Chain A: G.7, G.8, Y.16, T.18, N.40, Y.207, I.209 Ligands: OCT.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.16, A:T.18, A:I.209 LDA.13: 5 residues within 4Å: Chain A: Q.68, W.94, A.96, F.102 Ligands: LDA.14 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.94, A:A.96, A:F.102 Hydrogen bonds: A:Q.68, A:Q.68 LDA.14: 6 residues within 4Å: Chain A: L.92, W.94, F.102, I.104 Ligands: OCT.9, LDA.13 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.94, A:W.94, A:W.94, A:F.102, A:I.104

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wirth, C. et al., Nanc Crystal Structure, a Model for Outer Membrane Channels of the Acidic Sugar-Specific Kdgm Porin Family. J.Mol.Biol. (2009)

Release Date

2009-10-13

Peptides

PROBABLE N-ACETYLNEURAMINIC ACID OUTER MEMBRANE CHANNEL PROTEIN NANC: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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PROBABLE N-ACETYLNEURAMINIC ACID OUTER MEMBRANE CHANNEL PROTEIN NANC