SMTL ID : 2wkl.1 (1 other biounit)

Velaglucerase alfa

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: I.5, N.19, T.21, Y.22 No protein-ligand interaction detected (PLIP)

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 3 residues within 4Å: Chain A: T.138, H.145, N.146 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.138 Hydrogen bonds: A:H.145, A:H.145, A:N.146

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: K.79, W.228, R.277, H.306, E.429 3 PLIP interactions: 3 interactions with chain A Salt bridges: A:K.79, A:R.277, A:H.306 SO4.4: 6 residues within 4Å: Chain A: Y.11, S.12, R.353, S.356, W.357, D.358 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:S.12, A:S.12, A:S.12, A:S.356, A:W.357, A:D.358 Salt bridges: A:R.353 SO4.5: 2 residues within 4Å: Chain A: K.321, R.329 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:K.321, A:R.329 SO4.6: 4 residues within 4Å: Chain A: G.193, K.194, S.242, G.243 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.194, A:K.194, A:G.243 SO4.7: 2 residues within 4Å: Chain A: R.44, S.45 3 PLIP interactions: 3 interactions with chain A Water bridges: A:S.45, A:S.45 Salt bridges: A:R.44 SO4.8: 3 residues within 4Å: Chain A: R.44, S.465, Y.487 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.487 Salt bridges: A:R.44 SO4.9: 1 residues within 4Å: Chain A: R.277 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.277 SO4.10: 3 residues within 4Å: Chain A: R.170, P.428, H.451 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.170, A:H.451 SO4.11: 2 residues within 4Å: Chain A: S.45, R.47 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.43, A:S.45, A:S.45 Salt bridges: A:R.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brumshtein, B. et al., Characterization of Gene-Activated Human Acid-Beta-Glucosidase: Crystal Structure, Glycan Composition and Internalization Into Macrophages. Glycobiology (2010)

Release Date

2009-09-22

Peptides

GLUCOSYLCERAMIDASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GLUCOSYLCERAMIDASE

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