SMTL ID : 2wkn.2 (1 other biounit)

gamma lactamase from Delftia acidovorans

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.08 Å

Oligo State

homo-tetramer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.70, N.223, D.225, D.250 Ligands: ZN.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.225, A:D.225, A:D.250, H2O.10 ZN.2: 5 residues within 4Å: Chain A: D.250, H.252, E.259, E.267 Ligands: ZN.1 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.250, A:D.250, A:H.252, A:E.267, A:E.267 ZN.3: 5 residues within 4Å: Chain B: H.70, N.223, D.225, D.250 Ligands: ZN.4 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.225, B:D.225, B:D.250, H2O.20 ZN.4: 5 residues within 4Å: Chain B: D.250, H.252, E.259, E.267 Ligands: ZN.3 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:D.250, B:D.250, B:H.252, B:E.267, B:E.267 ZN.5: 5 residues within 4Å: Chain C: H.70, N.223, D.225, D.250 Ligands: ZN.6 4 PLIP interactions: 3 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.225, C:D.225, C:D.250, H2O.26 ZN.6: 5 residues within 4Å: Chain C: D.250, H.252, E.259, E.267 Ligands: ZN.5 5 PLIP interactions: 4 interactions with chain C, 1 Ligand-Water interactions Metal complexes: C:D.250, C:D.250, C:H.252, C:E.267, H2O.26 ZN.7: 5 residues within 4Å: Chain D: H.70, N.223, D.225, D.250 Ligands: ZN.8 4 PLIP interactions: 3 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:D.225, D:D.225, D:D.250, H2O.32 ZN.8: 5 residues within 4Å: Chain D: D.250, H.252, E.259, E.267 Ligands: ZN.7 5 PLIP interactions: 5 interactions with chain D Metal complexes: D:D.250, D:D.250, D:H.252, D:E.267, D:E.267

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Isupov, M.N. et al., The Structure of Gamma Lactamase from Delftia Acidovorans. To be Published

Release Date

2010-09-01

Peptides

FORMAMIDASE: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

FORMAMIDASE

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