SMTL ID : 2wl7.1

Crystal structure of the PSD93 PDZ1 domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.03 Å

Oligo State

homo-trimer

Ligands

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.59, V.60 Chain C: K.45 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Salt bridges: C:K.45 Hydrogen bonds: A:V.60 SO4.2: 3 residues within 4Å: Chain A: E.12, T.14, R.57 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.14 Water bridges: A:R.57, A:R.57 Salt bridges: A:R.57 SO4.4: 1 residues within 4Å: Chain A: F.10 2 PLIP interactions: 2 interactions with chain A Water bridges: A:F.10, A:Y.94 SO4.5: 3 residues within 4Å: Chain A: K.45 Chain B: R.59, V.60 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.60 Salt bridges: A:K.45 SO4.6: 3 residues within 4Å: Chain B: E.12, T.14, R.57 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.14 Water bridges: B:R.57, B:R.57 Salt bridges: B:R.57 SO4.8: 1 residues within 4Å: Chain B: F.10 2 PLIP interactions: 2 interactions with chain B Water bridges: B:F.10, B:Y.94 SO4.9: 3 residues within 4Å: Chain B: K.45 Chain C: R.59, V.60 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:V.60 Salt bridges: B:K.45 SO4.10: 3 residues within 4Å: Chain C: E.12, T.14, R.57 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:T.14 Water bridges: C:R.57, C:R.57 Salt bridges: C:R.57 SO4.12: 1 residues within 4Å: Chain C: F.10 2 PLIP interactions: 2 interactions with chain C Water bridges: C:F.10, C:Y.94

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: N.61, R.98 Chain C: T.44, K.45 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: T.44, K.45 Chain B: N.61, R.98 Ligand excluded by PLIP CL.11: 4 residues within 4Å: Chain B: T.44, K.45 Chain C: N.61, R.98 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fiorentini, M. et al., Structure of the First Pdz Domain of Human Psd-93. Acta Crystallogr.,Sect.F (2009)

Release Date

2010-01-19

Peptides

DISKS LARGE HOMOLOG 2: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

DISKS LARGE HOMOLOG 2