SMTL ID : 2wla.1

Streptococcus pyogenes Dpr

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-12-mer

Ligands

12 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: K.155, E.159, L.175 Chain D: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain D Hydrogen bonds: D:N.25, D:R.82 Water bridges: D:D.144, D:A.145, D:A.145, D:G.146 GOL.2: 8 residues within 4Å: Chain B: K.155, E.159, L.175 Chain I: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain I Hydrogen bonds: I:N.25, I:R.82 Water bridges: I:D.144, I:A.145, I:A.145, I:G.146 GOL.3: 8 residues within 4Å: Chain A: N.25, R.82, I.86, G.143, D.144 Chain C: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:N.25, A:R.82 Water bridges: A:D.144, A:A.145, A:A.145, A:G.146 GOL.4: 8 residues within 4Å: Chain C: N.25, R.82, I.86, G.143, D.144 Chain D: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.25, C:R.82 Water bridges: C:D.144, C:D.144, C:A.145, C:G.146 GOL.5: 8 residues within 4Å: Chain E: K.155, E.159, L.175 Chain H: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain H Hydrogen bonds: H:N.25, H:R.82 Water bridges: H:D.144, H:D.144, H:A.145, H:G.146 GOL.6: 8 residues within 4Å: Chain F: K.155, E.159, L.175 Chain J: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain J Hydrogen bonds: J:N.25, J:R.82 Water bridges: J:D.144, J:A.145, J:A.145, J:G.146 GOL.7: 8 residues within 4Å: Chain E: N.25, R.82, I.86, G.143, D.144 Chain G: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain E Hydrogen bonds: E:N.25, E:R.82 Water bridges: E:D.144, E:A.145, E:A.145, E:G.146 GOL.8: 8 residues within 4Å: Chain G: N.25, R.82, I.86, G.143, D.144 Chain H: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:N.25, G:R.82 Water bridges: G:D.144, G:D.144, G:A.145, G:G.146 GOL.9: 8 residues within 4Å: Chain I: K.155, E.159, L.175 Chain K: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain K Hydrogen bonds: K:N.25, K:R.82 Water bridges: K:D.144, K:D.144, K:A.145, K:G.146 GOL.10: 8 residues within 4Å: Chain J: K.155, E.159, L.175 Chain L: N.25, R.82, I.86, G.143, D.144 6 PLIP interactions: 6 interactions with chain L Hydrogen bonds: L:N.25, L:R.82 Water bridges: L:D.144, L:D.144, L:A.145, L:G.146 GOL.11: 8 residues within 4Å: Chain B: N.25, R.82, I.86, G.143, D.144 Chain K: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:N.25, B:R.82 Water bridges: B:D.144, B:D.144, B:A.145, B:G.146 GOL.12: 8 residues within 4Å: Chain F: N.25, R.82, I.86, G.143, D.144 Chain L: K.155, E.159, L.175 6 PLIP interactions: 6 interactions with chain F Hydrogen bonds: F:N.25, F:R.82 Water bridges: F:D.144, F:A.145, F:A.145, F:G.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Haikarainen, T. et al., Crystal Structures of Streptococcus Pyogenes Dpr Reveal a Dodecameric Iron-Binding Protein with a Ferroxidase Site. J.Biol.Inorg.Chem. (2010)

Release Date

2009-09-15

Peptides

DPS-LIKE PEROXIDE RESISTANCE PROTEIN: ABCDEFGHIJKL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

C
A

D
A

E
A

F
A

G
A

H
A

I
A

J
A

K
A

L
A

DPS-LIKE PEROXIDE RESISTANCE PROTEIN

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