SMTL ID : 2wm2.1 (3 other biounits)

CRYSTAL STRUCTURE OF THE COFACTOR-DEVOID 1-H-3-HYDROXY-4- OXOQUINALDINE 2,4-DIOXYGENASE (HOD) FROM ARTHROBACTER NITROGUAJACOLICUS RU61A IN COMPLEX WITH CHLORIDE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 1 residues within 4Å: Chain A: L.177 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:L.177 GOL.3: 4 residues within 4Å: Chain A: S.235, A.238, Y.246 Ligands: K.4 No protein-ligand interaction detected (PLIP)

4 x SRT: S,R MESO-TARTARIC ACID(Non-functional Binders)(Non-covalent)

SRT.2: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP) SRT.10: 4 residues within 4Å: Chain A: K.170, R.173, H.174, L.177 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.173, A:R.173, A:H.174 Water bridges: A:K.170 Salt bridges: A:R.173, A:H.174 SRT.11: 2 residues within 4Å: Chain A: H.167, D.168 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:D.168, A:D.168 Water bridges: A:H.167, A:H.167, A:H.167 Salt bridges: A:H.167 SRT.12: 3 residues within 4Å: Chain A: K.248, L.249, G.250 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.248

1 x K: POTASSIUM ION(Non-covalent)

K.4: 5 residues within 4Å: Chain A: A.238, H.241, P.242, F.244 Ligands: GOL.3 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:F.244

1 x NA: SODIUM ION(Non-functional Binders)

NA.5: 3 residues within 4Å: Chain A: L.164, H.167, R.173 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.167, A:R.173

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 4 residues within 4Å: Chain A: G.38, W.39, S.104, H.105 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: F.139, L.143, L.146, I.195 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: W.133, K.136 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain A: R.124 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Steiner, R.A. et al., Structural Basis for Cofactor-Independent Dioxygenation of N-Heteroaromatic Compounds at the {Alpha}/{Beta}-Hydrolase Fold. Proc.Natl.Acad.Sci.USA (2010)

Release Date

2010-01-26

Peptides

1-H-3-HYDROXY-4-OXOQUINALDINE 2,4-DIOXYGENASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

1-H-3-HYDROXY-4-OXOQUINALDINE 2,4-DIOXYGENASE

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