SMTL ID : 2wm3.1

Crystal structure of NmrA-like family domain containing protein 1 in complex with niflumic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

monomer

Ligands

1 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 26 residues within 4Å: Chain A: G.12, T.14, G.15, A.16, Q.17, T.37, R.38, K.42, G.58, D.59, Q.60, V.79, T.80, N.81, Y.82, W.83, E.84, E.91, Q.94, K.134, L.153, P.154, C.155, Y.156, N.159 Ligands: NFL.2 38 PLIP interactions: 38 interactions with chain A Hydrophobic interactions: A:L.153, A:Y.156 Hydrogen bonds: A:G.12, A:T.14, A:T.14, A:A.16, A:Q.17, A:Q.17, A:T.37, A:T.37, A:R.38, A:D.59, A:Q.60, A:T.80, A:Y.82, A:W.83, A:Q.94, A:K.134, A:Y.156, A:Y.156, A:N.159, A:N.159 Water bridges: A:G.12, A:G.12, A:G.18, A:R.38, A:R.38, A:R.38, A:K.42, A:N.81, A:N.81, A:N.81, A:N.81, A:N.81, A:N.81 Salt bridges: A:R.38, A:K.42 pi-Cation interactions: A:R.38

2 x NFL: 2-{[3-(TRIFLUOROMETHYL)PHENYL]AMINO}NICOTINIC ACID(Non-covalent)

NFL.2: 10 residues within 4Å: Chain A: W.83, L.115, H.130, C.155, N.159, H.163, L.258, M.261, Y.265 Ligands: NAP.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:W.83, A:H.163, A:L.258 Hydrogen bonds: A:W.83, A:N.159 Salt bridges: A:H.130, A:K.134 pi-Stacking: A:H.163 NFL.3: 9 residues within 4Å: Chain A: L.121, T.122, R.152, F.264, L.267, R.268, P.269, D.270 Ligands: PO4.4 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:L.121, A:F.264, A:F.264, A:L.267 Water bridges: A:R.152, A:R.152, A:D.270 Salt bridges: A:R.152 Halogen bonds: A:L.121

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 4 residues within 4Å: Chain A: L.121, T.122, R.125 Ligands: NFL.3 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.125

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: R.219, R.271, D.272, I.273, E.274 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:R.219, A:R.219, A:R.271, A:D.272, A:I.273, A:E.274, A:E.274

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.6: 1 residues within 4Å: Chain A: A.73 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bhatia, C. et al., Crystal Structure of Nmra-Like Family Domain Containing Protein 1 in Complex with Niflumic Acid. To be Published

Release Date

2009-08-04

Peptides

NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

NMRA-LIKE FAMILY DOMAIN CONTAINING PROTEIN 1

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