SMTL ID : 2wm4.1

X-ray structure of Mycobacterium tuberculosis cytochrome P450 CYP124 in complex with phytanic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: I.118, H.125, R.129, F.136, I.183, L.270, L.271, A.274, G.275, T.278, T.279, P.321, V.322, M.325, R.327, Y.350, G.377, F.378, G.379, A.383, H.384, C.386, L.387, G.388, A.392 Ligands: VGJ.2 27 PLIP interactions: 27 interactions with chain A, Hydrophobic interactions: A:I.118, A:F.136, A:I.183, A:L.270, A:A.274, A:T.278, A:T.279, A:P.321, A:V.322, A:V.322, A:Y.350, A:F.378, A:L.387, A:A.392 Hydrogen bonds: A:G.380 Water bridges: A:S.97, A:R.327, A:R.327, A:Y.350, A:F.378, A:G.381, A:H.384 Salt bridges: A:H.125, A:R.129, A:R.327, A:H.384 Metal complexes: A:C.386

1 x VGJ: (3R,7S,11S)-3,7,11,15-tetramethylhexadecanoic acid(Non-covalent)

VGJ.2: 13 residues within 4Å: Chain A: I.65, L.67, F.70, N.104, F.114, L.205, F.219, V.273, A.274, T.278, V.322, M.325 Ligands: HEM.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.67, A:F.70, A:F.70, A:N.104, A:F.114, A:F.114, A:L.205, A:F.219, A:V.273, A:V.322 Water bridges: A:Q.422

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 3 residues within 4Å: Chain A: N.163, D.165, Q.167 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.165, A:D.165, A:Q.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Johnston, J.B. et al., Biochemical and structural characterization of CYP124: a methyl-branched lipid omega-hydroxylase from Mycobacterium tuberculosis. Proc. Natl. Acad. Sci. U.S.A. (2009)

Release Date

2009-10-06

Peptides

PUTATIVE CYTOCHROME P450 124: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

PUTATIVE CYTOCHROME P450 124

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