SMTL ID : 2wm9.1

Structure of the complex between DOCK9 and Cdc42.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: R.59, P.63, N.64, R.253, H.285, C.286 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.59, A:N.64, A:C.286 GOL.2: 4 residues within 4Å: Chain A: D.96, W.99, T.133, R.136 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.96, A:D.96, A:R.136 Water bridges: A:T.133 GOL.3: 7 residues within 4Å: Chain B: G.14, A.15, V.16, G.17, K.18, T.19, C.20 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.14, B:G.17, B:K.18, B:T.19, B:T.19, B:C.20 Water bridges: B:V.16 GOL.4: 6 residues within 4Å: Chain C: R.59, P.63, N.64, R.253, H.285, C.286 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:R.59, C:N.64, C:C.286 GOL.5: 4 residues within 4Å: Chain C: D.96, W.99, T.133, R.136 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:D.96, C:D.96, C:R.136 Water bridges: C:T.133 GOL.6: 7 residues within 4Å: Chain D: G.14, A.15, V.16, G.17, K.18, T.19, C.20 7 PLIP interactions: 7 interactions with chain D Hydrogen bonds: D:G.14, D:G.17, D:K.18, D:T.19, D:T.19, D:C.20 Water bridges: D:V.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Activation of Rho Gtpases by Dock Exchange Factors is Mediated by a Nucleotide Sensor. Science (2009)

Release Date

2009-09-22

Peptides

DEDICATOR OF CYTOKINESIS PROTEIN 9: AC
CELL DIVISION CONTROL PROTEIN 42 HOMOLOG: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

DEDICATOR OF CYTOKINESIS PROTEIN 9

CELL DIVISION CONTROL PROTEIN 42 HOMOLOG

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