SMTL ID : 2wmo.1

Structure of the complex between DOCK9 and Cdc42.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-2-mer

Ligands

2 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)

GTP.1: 19 residues within 4Å: Chain B: D.13, G.14, A.15, V.16, G.17, K.18, T.19, C.20, T.60, A.61, G.62, Q.63, Q.118, D.120, L.121, S.160, A.161, L.162 Ligands: MG.2 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:A.15, B:V.16, B:G.17, B:K.18, B:T.19, B:T.19, B:C.20, B:G.62, B:Q.63, B:Q.63, B:Q.118, B:Q.118, B:A.161, B:L.162 Salt bridges: B:K.18, B:K.18, B:D.120 GTP.3: 19 residues within 4Å: Chain D: D.13, G.14, A.15, V.16, G.17, K.18, T.19, C.20, T.60, A.61, G.62, Q.63, Q.118, D.120, L.121, S.160, A.161, L.162 Ligands: MG.4 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:A.15, D:V.16, D:G.17, D:K.18, D:T.19, D:T.19, D:C.20, D:G.62, D:Q.63, D:Q.63, D:Q.118, D:Q.118, D:A.161, D:L.162 Salt bridges: D:K.18, D:K.18, D:D.120

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 2 residues within 4Å: Chain B: T.19 Ligands: GTP.1 2 PLIP interactions: 1 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:T.19, H2O.12 MG.4: 2 residues within 4Å: Chain D: T.19 Ligands: GTP.3 2 PLIP interactions: 1 interactions with chain D, 1 Ligand-Water interactions Metal complexes: D:T.19, H2O.24

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, J. et al., Activation of Rho Gtpases by Dock Exchange Factors is Mediated by a Nucleotide Sensor. Science (2009)

Release Date

2009-09-22

Peptides

DEDICATOR OF CYTOKINESIS PROTEIN 9: AC
CELL DIVISION CONTROL PROTEIN 42 HOMOLOG: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
A

B
B

D
B

DEDICATOR OF CYTOKINESIS PROTEIN 9

CELL DIVISION CONTROL PROTEIN 42 HOMOLOG

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