SMTL ID : 2wmz.1

Structure of a mutated TolC

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-trimer

Ligands

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Q.294, G.296, M.297, V.298 Ligand excluded by PLIP CL.3: 4 residues within 4Å: Chain B: Q.294, G.296, M.297, V.298 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain C: Q.294, G.296, M.297, V.298 Ligand excluded by PLIP

5 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.2: 5 residues within 4Å: Chain A: Q.41, L.42, G.43, Q.70, T.72 1 PLIP interactions: 1 interactions with chain A Water bridges: A:L.44 PGE.5: 6 residues within 4Å: Chain B: Q.41, L.42, G.43, T.72 Chain C: S.289, Q.294 No protein-ligand interaction detected (PLIP) PGE.6: 4 residues within 4Å: Chain B: Q.236, Q.301, A.305, N.308 No protein-ligand interaction detected (PLIP) PGE.8: 4 residues within 4Å: Chain C: Q.236, Q.301, A.305, N.308 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.236 PGE.9: 7 residues within 4Å: Chain A: S.289 Chain C: Q.41, L.42, G.43, L.44, Q.70, T.72 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:Q.70

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain B: E.180 Chain C: N.332 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.180

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pei, X.Y. et al., Structures of Sequential Open States in a Symmetrical Opening Transition of the Tolc Exit Duct. Proc.Natl.Acad.Sci.USA (2011)

Release Date

2011-01-26

Peptides

OUTER MEMBRANE PROTEIN TOLC: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

OUTER MEMBRANE PROTEIN TOLC