SMTL ID : 2wnw.1

The crystal structure of SrfJ from salmonella typhimurium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

homo-dimer

Ligands

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 4 residues within 4Å: Chain A: P.38, R.405, D.423, Q.444 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.423, A:D.423 Salt bridges: A:R.405 PO4.2: 5 residues within 4Å: Chain A: D.302, A.303, G.304, S.305, R.308 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.304, A:G.304 Water bridges: A:R.308, A:R.308 Salt bridges: A:R.308 PO4.5: 6 residues within 4Å: Chain B: N.336, S.337, E.338, Y.354, D.355, A.356 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:S.337, B:S.337, B:E.338, B:E.338, B:D.355, B:A.356 PO4.6: 4 residues within 4Å: Chain B: P.38, R.405, D.423, Q.444 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.423, B:D.423 Water bridges: B:R.39, B:D.423 Salt bridges: B:R.405

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: D.273, H.274, F.275, S.276 Chain B: K.322, S.387, S.388, E.395 8 PLIP interactions: 3 interactions with chain A, 5 interactions with chain B Hydrogen bonds: A:H.274, A:F.275, A:S.276, B:K.322, B:S.388, B:E.395 Water bridges: B:E.395, B:E.395 GOL.4: 9 residues within 4Å: Chain A: D.94, F.95, W.144, N.195, E.196, W.203, E.294, W.331, N.346 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.94, A:N.195, A:E.196, A:N.346 GOL.7: 10 residues within 4Å: Chain B: D.94, F.95, W.144, N.195, E.196, W.203, Y.270, E.294, W.331, N.346 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:D.94, B:N.195, B:E.196, B:E.196, B:N.346 GOL.8: 3 residues within 4Å: Chain B: P.223, R.224, R.227 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.227 Water bridges: B:R.224, B:R.224, B:R.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Kim, Y.-G. et al., Crystal Structure of the Salmonella Enterica Serovar Typhimurium Virulence Factor Srfj, a Glycoside Hydrolase Family Enzyme. J.Bacteriol. (2009)

Release Date

2010-03-02

Peptides

ACTIVATED BY TRANSCRIPTION FACTOR SSRB: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ACTIVATED BY TRANSCRIPTION FACTOR SSRB