SMTL ID : 2woc.1 (2 other biounits)

CRYSTAL STRUCTURE OF THE DINITROGENASE REDUCTASE-ACTIVATING GLYCOHYDROLASE (DRAG) FROM RHODOSPIRILLUM RUBRUM

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

2 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: D.248, D.250, T.251 Ligands: FMT.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.248, A:D.248, A:D.250, A:T.251, H2O.12 MN.2: 5 residues within 4Å: Chain A: E.33, T.64, D.65, D.102, D.250 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:T.64, A:D.65, A:D.102, A:D.250

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.3: 7 residues within 4Å: Chain A: D.65, N.131, M.135, D.248, D.250, T.251 Ligands: MN.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.65

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 6 residues within 4Å: Chain A: P.60, S.275, K.276, L.277, D.278, M.279 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.276, A:M.279 GOL.6: 6 residues within 4Å: Chain A: R.48, K.49, K.236, P.270, G.272, W.273 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.48, A:R.48, A:K.49, A:K.236, A:G.272, A:W.273

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 3 residues within 4Å: Chain A: K.49, M.50, W.273 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Berthold, C.L. et al., Mechanism of Adp-Ribosylation Removal Revealed by the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-08-11

Peptides

ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

ADP-RIBOSYL-[DINITROGEN REDUCTASE] GLYCOHYDROLASE

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