SMTL ID : 2wok.1

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with bradykinin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ARG- PRO- PRO- GLY- PHE- ARG: Kininogen-1(Non-covalent)

ARG-PRO-PRO-GLY-PHE-ARG.1: 16 residues within 4Å: Chain A: Y.52, V.54, W.57, R.276, F.303, Q.398, F.402, F.431, D.452, W.453, G.454, A.455, D.456, W.480 Ligands: GOL.2, GOL.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:F.431, A:F.431, A:D.452, A:W.480 Hydrogen bonds: A:Y.52, A:G.454, A:A.455, A:D.456 Water bridges: A:D.256 Salt bridges: A:D.456 pi-Stacking: A:F.402 pi-Cation interactions: A:W.57

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: W.57, Y.70, A.455, D.456, F.457, P.458, A.547, F.548 Ligands: ARG-PRO-PRO-GLY-PHE-ARG.1, GOL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.547 Water bridges: A:Y.70, A:D.456 GOL.3: 11 residues within 4Å: Chain A: V.54, T.301, S.302, F.303, G.454, A.455, A.547, F.548, G.549 Ligands: ARG-PRO-PRO-GLY-PHE-ARG.1, GOL.2 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.301, A:G.454, A:F.548 Water bridges: A:S.302

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackenzie, A.K. et al., Crystal structures of an oligopeptide-binding protein from the biosynthetic pathway of the beta-lactamase inhibitor clavulanic acid. J. Mol. Biol. (2010)

Release Date

2009-12-08

Peptides

CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2

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