SMTL ID : 2wop.1

Clavulanic acid biosynthesis oligopeptide binding protein 2 complexed with arginine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x ARG: ARGININE(Non-covalent)

ARG.1: 10 residues within 4Å: Chain A: Y.52, V.54, W.57, W.453, G.454, A.455, D.456, W.480 Ligands: GOL.2, ACT.3 8 PLIP interactions: 8 interactions with chain A, Hydrogen bonds: A:Y.52, A:G.454, A:A.455, A:D.456 Water bridges: A:Y.52, A:V.54 Salt bridges: A:D.456 pi-Cation interactions: A:W.57

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: W.57, Y.70, A.455, D.456, F.457, P.458, A.547, F.548 Ligands: ARG.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Ligand interactions Water bridges: A:Y.70, A:Q.189 Hydrogen bonds: R.1, R.1

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: F.303, F.431, D.452, W.453, W.480 Ligands: ARG.1 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Hydrophobic interactions: A:F.431 Water bridges: R.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mackenzie, A.K. et al., Crystal Structures of an Oligopeptide-Binding Protein from the Biosynthetic Pathway of the Beta-Lactamase Inhibitor Clavulanic Acid. J.Mol.Biol. (2010)

Release Date

2009-12-08

Peptides

CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CLAVULANIC ACID BIOSYNTHESIS OLIGOPEPTIDE BINDING PROTEIN 2

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