SMTL ID : 2wq4.1

N-terminal domain of BC2L-C Lectin from Burkholderia cenocepacia

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.42 Å

Oligo State

homo-trimer

Ligands

3 x SFU: methyl 1-seleno-alpha-L-fucopyranoside(Non-covalent)

SFU.1: 7 residues within 4Å: Chain A: Y.49, S.83, T.84, G.85, R.86 Chain C: T.75, R.112 7 PLIP interactions: 3 interactions with chain A, 4 interactions with chain C Hydrophobic interactions: A:Y.49 Hydrogen bonds: A:R.86, C:T.75, C:T.75, C:R.112, C:R.112 Water bridges: A:S.83 SFU.3: 7 residues within 4Å: Chain A: T.75, R.112 Chain B: Y.49, S.83, T.84, G.85, R.86 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:Y.49 Hydrogen bonds: B:R.86, A:T.75, A:R.112, A:R.112 Water bridges: B:S.83 SFU.4: 7 residues within 4Å: Chain B: T.75, R.112 Chain C: Y.49, S.83, T.84, G.85, R.86 6 PLIP interactions: 3 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:Y.49 Hydrogen bonds: C:R.86, B:T.75, B:R.112, B:R.112 Water bridges: C:S.83

1 x BR: BROMIDE ION(Non-covalent)

BR.2: 4 residues within 4Å: Chain A: G.37, K.38, T.130, A.131 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Sulak, O. et al., A Tnf-Like Trimeric Lectin Domain from Burkholderia Cenocepacia with Specificity for Fucosylated Human Histo-Blood Group Antigens. Structure (2010)

Release Date

2010-01-12

Peptides

LECTIN: ABC

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

LECTIN