SMTL ID : 2wqf.1

Crystal Structure of the Nitroreductase CinD from Lactococcus lactis in Complex with FMN

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

homo-dimer

Ligands

2 x FMN: FLAVIN MONONUCLEOTIDE(Non-covalent)

FMN.1: 18 residues within 4Å: Chain A: R.10, R.11, T.12, Y.14, V.135, W.138, L.150, Q.151, H.152, K.189 Chain B: P.38, T.39, A.40, F.41, N.42, W.125, Q.128, I.132 23 PLIP interactions: 7 interactions with chain B, 16 interactions with chain A Hydrophobic interactions: B:P.38, B:A.40, B:I.132, A:L.150 Hydrogen bonds: B:F.41, B:N.42, A:T.12, A:T.12, A:T.12, A:Q.151, A:Q.151, A:H.152 Water bridges: B:F.41, A:R.11, A:R.11, A:R.11, A:L.150, A:L.150, A:K.189 pi-Stacking: B:W.125 Salt bridges: A:R.10, A:R.11, A:K.189 FMN.2: 18 residues within 4Å: Chain A: P.38, T.39, A.40, F.41, N.42, W.125, Q.128, I.132 Chain B: R.10, R.11, T.12, Y.14, V.135, W.138, L.150, Q.151, H.152, K.189 23 PLIP interactions: 7 interactions with chain A, 16 interactions with chain B Hydrophobic interactions: A:P.38, A:A.40, A:I.132, B:L.150 Hydrogen bonds: A:F.41, A:N.42, B:T.12, B:T.12, B:T.12, B:Q.151, B:Q.151, B:H.152 Water bridges: A:F.41, B:R.11, B:R.11, B:R.11, B:L.150, B:L.150, B:K.189 pi-Stacking: A:W.125 Salt bridges: B:R.10, B:R.11, B:K.189

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Mermod, M. et al., Structure and Function of Cind (Ytjd) of Lactococcus Lactis, a Copper-Induced Nitroreductase Involved in Defense Against Oxidative Stress. J.Bacteriol. (2010)

Release Date

2010-06-30

Peptides

COPPER INDUCED NITROREDUCTASE D: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

COPPER INDUCED NITROREDUCTASE D