SMTL ID : 2wql.1 (1 other biounit)

CRYSTAL STRUCTURE OF THE MAJOR CARROT ALLERGEN DAU C 1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

homo-hexamer

Ligands

6 x P4C: O-ACETALDEHYDYL-HEXAETHYLENE GLYCOL(Non-covalent)

P4C.1: 10 residues within 4Å: Chain A: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Y.39, A:T.116 P4C.7: 10 residues within 4Å: Chain B: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.8 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.116 P4C.15: 10 residues within 4Å: Chain C: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.16 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:T.116 P4C.21: 10 residues within 4Å: Chain D: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.22 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Y.39, D:T.116 P4C.29: 10 residues within 4Å: Chain E: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.30 No protein-ligand interaction detected (PLIP) P4C.35: 10 residues within 4Å: Chain F: I.23, Y.39, V.69, Y.81, S.83, T.100, T.116, N.140, L.143 Ligands: PEG.36 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:Y.39

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 5 residues within 4Å: Chain A: M.67, I.90, Q.139, N.140 Ligands: P4C.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.139, A:N.140 PEG.8: 5 residues within 4Å: Chain B: M.67, I.90, Q.139, N.140 Ligands: P4C.7 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.139, B:N.140 PEG.9: 4 residues within 4Å: Chain B: N.75, E.77 Chain C: A.50, D.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.75, B:E.77 PEG.10: 6 residues within 4Å: Chain B: E.77, A.78 Chain C: D.72, D.82, E.99, H.101 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.77, B:E.77 PEG.16: 5 residues within 4Å: Chain C: M.67, I.90, Q.139, N.140 Ligands: P4C.15 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:Q.139, C:N.140 PEG.22: 5 residues within 4Å: Chain D: M.67, I.90, Q.139, N.140 Ligands: P4C.21 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:Q.139, D:N.140 PEG.23: 4 residues within 4Å: Chain D: N.75, E.77 Chain E: A.50, D.72 2 PLIP interactions: 2 interactions with chain D Hydrogen bonds: D:N.75, D:E.77 PEG.24: 6 residues within 4Å: Chain D: E.77, A.78 Chain E: D.72, D.82, E.99, H.101 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:E.77 PEG.30: 5 residues within 4Å: Chain E: M.67, I.90, Q.139, N.140 Ligands: P4C.29 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:Q.139, E:N.140 PEG.36: 5 residues within 4Å: Chain F: M.67, I.90, Q.139, N.140 Ligands: P4C.35 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:Q.139, F:N.140 PEG.37: 4 residues within 4Å: Chain A: A.50, D.72 Chain F: N.75, E.77 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.75, F:E.77 PEG.38: 6 residues within 4Å: Chain A: D.72, D.82, E.99, H.101 Chain F: E.77, A.78 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:E.77

24 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: H.121 Ligand excluded by PLIP CL.4: 2 residues within 4Å: Chain A: S.15, K.18 Ligand excluded by PLIP CL.5: 2 residues within 4Å: Chain A: H.6, S.7 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: Q.4, S.5 Ligand excluded by PLIP CL.11: 1 residues within 4Å: Chain B: H.121 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain B: S.15, K.18 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: H.6, S.7 Ligand excluded by PLIP CL.14: 2 residues within 4Å: Chain B: Q.4, S.5 Ligand excluded by PLIP CL.17: 1 residues within 4Å: Chain C: H.121 Ligand excluded by PLIP CL.18: 2 residues within 4Å: Chain C: S.15, K.18 Ligand excluded by PLIP CL.19: 2 residues within 4Å: Chain C: H.6, S.7 Ligand excluded by PLIP CL.20: 2 residues within 4Å: Chain C: Q.4, S.5 Ligand excluded by PLIP CL.25: 1 residues within 4Å: Chain D: H.121 Ligand excluded by PLIP CL.26: 2 residues within 4Å: Chain D: S.15, K.18 Ligand excluded by PLIP CL.27: 2 residues within 4Å: Chain D: H.6, S.7 Ligand excluded by PLIP CL.28: 2 residues within 4Å: Chain D: Q.4, S.5 Ligand excluded by PLIP CL.31: 1 residues within 4Å: Chain E: H.121 Ligand excluded by PLIP CL.32: 2 residues within 4Å: Chain E: S.15, K.18 Ligand excluded by PLIP CL.33: 2 residues within 4Å: Chain E: H.6, S.7 Ligand excluded by PLIP CL.34: 2 residues within 4Å: Chain E: Q.4, S.5 Ligand excluded by PLIP CL.39: 1 residues within 4Å: Chain F: H.121 Ligand excluded by PLIP CL.40: 2 residues within 4Å: Chain F: S.15, K.18 Ligand excluded by PLIP CL.41: 2 residues within 4Å: Chain F: H.6, S.7 Ligand excluded by PLIP CL.42: 2 residues within 4Å: Chain F: Q.4, S.5 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Markovic-Housley, Z. et al., Structure of the Major Carrot Allergen Dau C 1. Acta Crystallogr.,Sect.D (2009)

Release Date

2009-09-01

Peptides

MAJOR ALLERGEN DAU C 1: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

MAJOR ALLERGEN DAU C 1

Related Entries With Identical Sequence