SMTL ID : 2wqw.1 (1 other biounit)

DOUBLE-DISULFIDE CROSS-LINKED CRYSTAL DIMER of the Listeria monocytogenes InlB internalin domain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.24 Å

Oligo State

homo-dimer

Ligands

12 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 5 residues within 4Å: Chain A: F.91, D.93, S.113, E.115, Y.135 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.113, A:E.115 Water bridges: A:N.71 PEG.2: 2 residues within 4Å: Chain A: N.50, G.72 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.50, A:G.72 PEG.3: 4 residues within 4Å: Chain A: N.41, S.42, D.44, N.64 1 PLIP interactions: 1 interactions with chain A Water bridges: A:D.44 PEG.4: 4 residues within 4Å: Chain A: P.234, E.235, I.237, Y.243 1 PLIP interactions: 1 interactions with chain A Water bridges: A:Y.243 PEG.5: 2 residues within 4Å: Chain A: T.2, Y.61 No protein-ligand interaction detected (PLIP) PEG.6: 5 residues within 4Å: Chain A: S.186, D.187, N.222, T.223, K.225 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.187, A:D.187, A:K.225 PEG.7: 5 residues within 4Å: Chain B: F.91, D.93, S.113, E.115, Y.135 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.113, B:E.115 Water bridges: B:N.71 PEG.8: 2 residues within 4Å: Chain B: N.50, G.72 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.50, B:G.72 PEG.9: 4 residues within 4Å: Chain B: N.41, S.42, D.44, N.64 No protein-ligand interaction detected (PLIP) PEG.10: 4 residues within 4Å: Chain B: P.234, E.235, I.237, Y.243 1 PLIP interactions: 1 interactions with chain B Water bridges: B:Y.243 PEG.11: 2 residues within 4Å: Chain B: T.2, Y.61 No protein-ligand interaction detected (PLIP) PEG.12: 5 residues within 4Å: Chain B: S.186, D.187, N.222, T.223, K.225 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:D.187, B:K.225

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferraris, D.M. et al., Ligand-Mediated Dimerization of the met Receptor Tyrosine Kinase by the Bacterial Invasion Protein Inlb. J.Mol.Biol. (2010)

Release Date

2009-11-10

Peptides

INTERNALIN B: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

INTERNALIN B

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