SMTL ID : 2wrg.1

structure of H1 1918 hemagglutinin with human receptor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

1 x GAL- NAG- GAL- SIA: N-acetyl-alpha-neuraminic acid-(2-6)-beta-D-galactopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-3)-beta-D-galactopyranose(Non-covalent)

GAL-NAG-GAL-SIA.1: 15 residues within 4Å: Chain C: Y.91, K.130, V.132, T.133, A.134, W.150, H.180, P.183, D.187, S.190, L.191, K.219, D.222, Q.223, G.225 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:K.219, C:K.219, C:D.187, C:D.187, C:V.132, C:T.133, C:A.134, C:H.180, C:Q.223, C:Q.223, C:G.225 Hydrophobic interactions: C:L.191

11 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Non-covalent)(Non-functional Binders)

NAG.2: 6 residues within 4Å: Chain A: N.64, E.66, N.87, C.90, R.221 Ligands: NAG.3 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:E.66 Hydrogen bonds: A:N.64, A:N.87, A:N.87, A:N.87, A:R.221 NAG.3: 1 residues within 4Å: Ligands: NAG.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.221 NAG.4: 2 residues within 4Å: Chain A: E.34, N.287 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:N.287 Hydrogen bonds: A:N.287 NAG.5: 1 residues within 4Å: Chain A: N.11 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.11, A:N.11 NAG.6: 3 residues within 4Å: Chain A: T.13, T.15, N.23 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.15 Hydrogen bonds: A:N.23 NAG.7: 8 residues within 4Å: Chain C: N.64, P.65, E.66, E.86, N.87, C.90, R.221 Ligands: NAG.8 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.64, C:E.86, C:E.86, C:N.87, C:R.221, C:R.221 NAG.8: 2 residues within 4Å: Chain C: R.221 Ligands: NAG.7 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:R.221 NAG.9: 4 residues within 4Å: Chain D: A.147, E.150, N.154, T.156 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.154, D:N.154, D:N.154, D:T.156 NAG.10: 5 residues within 4Å: Chain E: N.64, E.66, N.87, C.90, R.221 5 PLIP interactions: 5 interactions with chain E Hydrophobic interactions: E:E.66 Hydrogen bonds: E:N.64, E:N.87, E:N.87, E:R.221 NAG.11: 1 residues within 4Å: Chain E: N.23 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:N.23 NAG.12: 3 residues within 4Å: Chain F: E.150, N.154, T.156 3 PLIP interactions: 3 interactions with chain F Hydrogen bonds: F:E.150, F:N.154, F:T.156

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, J. et al., From the Cover: Structures of Receptor Complexes Formed by Hemagglutinins from the Asian Influenza Pandemic of 1957. Proc.Natl.Acad.Sci.USA (2009)

Release Date

2009-09-29

Peptides

HEMAGGLUTININ HA1 CHAIN: ACE
HEMAGGLUTININ HA2 CHAIN: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
J

E
L

B
I

D
K

F
M

HEMAGGLUTININ HA1 CHAIN

HEMAGGLUTININ HA2 CHAIN