SMTL ID : 2wtp.1

Crystal Structure of Cu-form Czce from C. metallidurans CH34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

3 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.1: 7 residues within 4Å: Chain A: G.52, D.53, G.78, T.93, F.94, A.95, Q.96 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.53, A:D.53, A:Q.96 PEG.11: 5 residues within 4Å: Chain B: L.50, A.95, Q.96, M.97 Ligands: CL.18 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:L.50, B:Q.96 Water bridges: B:Q.96 PEG.12: 9 residues within 4Å: Chain B: A.44, K.45, A.48, T.49, P.54, W.92, L.107, L.108, P.110 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:T.49, B:T.49

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: T.49, G.52, D.53, P.54, W.92 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.49

3 x CU: COPPER (II) ION(Non-covalent)

CU.3: 1 residues within 4Å: Chain A: H.47 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:H.47 CU.13: 5 residues within 4Å: Chain A: D.123 Chain B: D.100, D.123 Ligands: MG.4, TRS.10 4 PLIP interactions: 1 interactions with chain B, 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: B:D.123, A:D.123, A:D.123, H2O.195 CU.14: 1 residues within 4Å: Chain B: H.47 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:H.47

1 x MG: MAGNESIUM ION(Non-covalent)

MG.4: 4 residues within 4Å: Chain A: D.100, D.123 Chain B: D.123 Ligands: CU.13 5 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: B:D.123, A:D.123, H2O.76, H2O.96, H2O.193

10 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 4 residues within 4Å: Chain A: R.62, N.74 Chain B: R.62, N.74 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: R.99, D.100 Ligand excluded by PLIP CL.7: 4 residues within 4Å: Chain A: H.47, V.103, D.104, R.119 Ligand excluded by PLIP CL.8: 5 residues within 4Å: Chain A: R.62, I.63 Chain B: G.69, M.70, R.71 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: M.109, P.110, D.111 Ligand excluded by PLIP CL.15: 3 residues within 4Å: Chain B: R.99, D.100, R.124 Ligand excluded by PLIP CL.16: 3 residues within 4Å: Chain B: E.87, K.88, I.89 Ligand excluded by PLIP CL.17: 3 residues within 4Å: Chain B: M.109, P.110, D.111 Ligand excluded by PLIP CL.18: 3 residues within 4Å: Chain B: M.97, V.98 Ligands: PEG.11 Ligand excluded by PLIP CL.19: 3 residues within 4Å: Chain B: G.69, M.70, R.71 Ligand excluded by PLIP

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.10: 7 residues within 4Å: Chain A: D.123, R.124, D.126 Chain B: D.100, D.123, R.124 Ligands: CU.13 8 PLIP interactions: 4 interactions with chain B, 4 interactions with chain A Hydrogen bonds: B:R.124, B:R.124, A:R.124 Water bridges: B:D.100, B:D.100, A:D.76, A:R.124, A:S.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petit-Haertlein, I. et al., Evidence for Conformational Changes Upon Copper Binding to Cupriavidus Metallidurans Czce. Biochemistry (2010)

Release Date

2010-08-18

Peptides

ORF131 PROTEIN: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ORF131 PROTEIN

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