SMTL ID : 2wu9.1

Crystal structure of peroxisomal KAT2 from Arabidopsis thaliana

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

homo-dimer

Ligands

9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 3 residues within 4Å: Chain A: L.27, G.29, D.30 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.30 Water bridges: A:D.30 EDO.2: 8 residues within 4Å: Chain A: P.55, A.87, P.88, Q.91, R.92, E.95, T.150, N.151 7 PLIP interactions: 5 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.91, A:R.92, A:E.95, A:N.151 Water bridges: A:E.95, B:E.156, B:E.156 EDO.3: 4 residues within 4Å: Chain A: G.135, F.136, Y.137, D.138 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.136 Water bridges: A:D.138, A:K.285 EDO.4: 7 residues within 4Å: Chain A: A.197, S.201, K.204, E.342, F.348, R.352, N.363 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:S.201, A:K.204, A:R.352 Water bridges: A:R.352, A:I.362 EDO.5: 10 residues within 4Å: Chain A: N.171, C.172, L.174, M.176, T.179, P.310, M.313, G.407, T.408, G.409 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:C.172, A:T.408 EDO.6: 3 residues within 4Å: Chain A: Q.196, V.199, L.250 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.196 Water bridges: A:R.203 EDO.7: 7 residues within 4Å: Chain B: A.197, D.200, S.201, K.204, E.342, F.348, R.352 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.204, B:E.342, B:R.352 Water bridges: B:D.200 EDO.8: 9 residues within 4Å: Chain B: L.27, R.286, V.296, V.299, R.301, R.418, G.419, D.420, E.424 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.286, B:R.286, B:R.301, B:D.420 EDO.9: 5 residues within 4Å: Chain A: G.135, F.136 Chain B: T.302, F.303, A.327 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:F.303 Water bridges: B:F.303, B:A.323, A:F.136

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pye, V.E. et al., Peroxisomal Plant 3-Ketoacyl-Coa Thiolases Structure and Activity are Regulated by a Sensitive Redox Switch. J.Biol.Chem. (2010)

Release Date

2010-05-12

Peptides

3-KETOACYL-COA THIOLASE 2, PEROXISOMAL: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

3-KETOACYL-COA THIOLASE 2, PEROXISOMAL