SMTL ID : 2wur.1

Atomic resolution structure of GFP measured on a rotating anode

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 0.90 Å

Oligo State

monomer

Ligands

1 x IPA: ISOPROPYL ALCOHOL(Non-functional Binders)

IPA.1: 7 residues within 4Å: Chain A: Y.39, G.40, R.71, F.221, V.222, T.223 Ligands: EOH.2 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.71, A:R.71, A:T.223

7 x EOH: ETHANOL(Non-functional Binders)

EOH.2: 5 residues within 4Å: Chain A: S.200, Q.202, F.221, T.223 Ligands: IPA.1 No protein-ligand interaction detected (PLIP) EOH.3: 7 residues within 4Å: Chain A: E.17, L.18, D.19, R.120, I.121, E.122 Ligands: EOH.4 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:E.122 Hydrogen bonds: A:D.19 Water bridges: A:E.17 EOH.4: 7 residues within 4Å: Chain A: R.107, A.108, E.109, R.120, I.121, E.122 Ligands: EOH.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.107, A:R.107 EOH.5: 1 residues within 4Å: Chain A: K.124 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:K.124 EOH.6: 4 residues within 4Å: Chain A: N.157, P.190, V.191, L.193 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.190 Hydrogen bonds: A:N.157, A:N.157, A:V.191 EOH.7: 4 residues within 4Å: Chain A: N.210, E.211, K.212, R.213 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.211, A:K.212, A:R.213 EOH.8: 4 residues within 4Å: Chain A: H.25, P.54, L.135, H.137 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.135 Hydrogen bonds: A:H.137

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shinobu, A. et al., Visualizing Proton Antenna in a High-Resolution Green Fluorescent Protein Structure. J.Am.Chem.Soc. (2010)

Release Date

2010-05-12

Peptides

GREEN FLUORESCENT PROTEIN: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

GREEN FLUORESCENT PROTEIN