- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPU: 2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 6 residues within 4Å:- Chain A: G.439, D.440, I.465, N.467, G.469
- Ligands: TPU.1
2 PLIP interactions:2 interactions with chain A- Metal complexes: A:D.440, A:I.465
MG.5: 4 residues within 4Å:- Chain B: D.440, N.467, G.469
- Ligands: TPU.4
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.440, B:G.469, H2O.25
MG.7: 4 residues within 4Å:- Chain C: D.440, N.467, G.469
- Ligands: TPU.6
3 PLIP interactions:2 interactions with chain C, 1 Ligand-Water interactions- Metal complexes: C:D.440, C:G.469, H2O.38
MG.8: 4 residues within 4Å:- Chain D: D.440, N.467, G.469
- Ligands: TPU.9
3 PLIP interactions:2 interactions with chain D, 1 Ligand-Water interactions- Metal complexes: D:D.440, D:G.469, H2O.52
- 2 x PYR: PYRUVIC ACID(Non-covalent)
PYR.3: 9 residues within 4Å:- Chain A: G.26, D.27, H.114
- Chain D: Y.290, T.388, I.472, E.473, I.476
- Ligands: TPU.9
6 PLIP interactions:2 interactions with chain D, 4 interactions with chain A- Hydrophobic interactions: D:T.388, D:I.472
- Hydrogen bonds: A:D.27
- Water bridges: A:D.27, A:Y.28
- Salt bridges: A:H.114
PYR.10: 10 residues within 4Å:- Chain A: Y.290, T.388, G.413, I.472, E.473, I.476
- Chain D: G.26, D.27, H.114
- Ligands: TPU.1
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain D- Hydrophobic interactions: A:T.388, A:I.472
- Hydrogen bonds: A:Y.290, D:D.27, D:D.27
- Water bridges: D:Y.28
- Salt bridges: D:H.114
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pei, X.Y. et al., Structural Insights Into the Pre-Reaction State of Pyruvate Decarboxylase from Zymomonas Mobilis. Biochemistry (2010)
- Release Date
- 2010-02-09
- Peptides
- PYRUVATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
XC
YD
Z
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x TPU: 2-{1-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-5-METHYL-1H-1,2,3-TRIAZOL-4-YL}ETHYL TRIHYDROGEN DIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 2 x PYR: PYRUVIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Pei, X.Y. et al., Structural Insights Into the Pre-Reaction State of Pyruvate Decarboxylase from Zymomonas Mobilis. Biochemistry (2010)
- Release Date
- 2010-02-09
- Peptides
- PYRUVATE DECARBOXYLASE: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
XC
YD
Z